4UEG - JenaLib

Title :   CRYSTAL STRUCTURE OF HUMAN GLYCOGENIN-2 CATALYTIC DOMAIN

Authors :   M. Fairhead, C. Strain-Damerell, T. Krojer, D. S. Froese, J. Kopec, R. N N. Burgess-Brown, F. Von Delft, C. Arrowsmith, A. Edwards, C. Bountr W. W. Yue

Date :   17 Dec 14 (Deposition) - 24 Dec 14 (Release) - 24 Dec 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.93

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (2x)

Keywords :   Transferase, Glycogen Biosynthesis, Glycosylation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Fairhead, C. Strain-Damerell, T. Krojer, D. S. Froese, J. Kopec, R. Nowak, N. Burgess-Brown, F. Von Delft, C. Arrowsmith, A. Edwards, C. Bountra, W. W. Yue
Crystal Structure Of Human Glycogenin-2 Catalytic Domain
To Be Published
PubMed: search

Compounds

Molecule 1 - GLYCOGENIN-2
	Chains	:	A, B
	EC Number	:	2.4.1.186
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PNIC-CTHF
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Variant	:	R3-PRARE2
	Expression System Vector Type	:	PLASMID
	Fragment	:	GLYCOSYLTRANSFERASE, RESIDUES 35-300
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	GN-2, GN2, GLYCOGENIN-2 CATALYTIC DOMAIN

Structural Features

Chains, Units

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (2x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (1, 2)

Asymmetric Unit (1, 2)

No.	Name	Count	Type	Full Name
1	MG	2	Ligand/Ion	MAGNESIUM ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION

Sites (2, 2)

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP B:104 , ASP B:106 , HIS B:214	BINDING SITE FOR RESIDUE MG B1266
2	AC2	SOFTWARE	ASP A:104 , ASP A:106 , HIS A:214 , HOH A:2074 , HOH A:2117	BINDING SITE FOR RESIDUE MG A1270

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:242
                                                                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee....hhhhhhhhhhhhhhh....eeeeee....hhhhhhhhh....eeee......hhhhhhhhhhh..hhhhhhhhhhhhh....eeeee...eee...hhhhhhh...eeee.......eeeeeeee..hhhhhhhhhhhhhhhh....hhhhhhhhhh......hhhh..hhhhh...hhhhhhhhhhh.eee.....hhhhh..hhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ueg A   4 TDQAFVTLATNDIYCQGALVLGQSLRRHRLTRKLVVLITPQVSDLLRRILSKVFDEVIEVNLIDSADYIHLAFLKRPELGLTLTKLHCWTLTHYSKCVFLDADTLVLSNVDELFDRGEFSAAPDPGWPDCFNSGVFVFQPSLHTHKLLLQHAMEHGSFDGADQGLLNSFFRNWSTTDIHKHLPFIYNLSSSPAFKQFGSSAKVVHFLGSMKPWNYKYQAAFLHLWWTVYQNNVLPLYKSVQA 269
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193|      209       219      |247       257       267  
                                                                                                                                                                                                                       193|                       226|                        
                                                                                                                                                                                                                        200                        245

Chain B from PDB  Type:PROTEIN  Length:249
                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee....hhhhhhhhhhhhhhh....eeeeee....hhhhhhhhh....eeee....hhhhhhhhhhh..hhhhhhhhhhhhh....eeeee...eee...hhhhhhh...eeee.......eeeeeeee..hhhhhhhhhhhhhhhh....hhhhhhhhhh......hhhh..hhhhhee.......hhhhhhhhhhh.eee.....hhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ueg B   4 TDQAFVTLATNDIYCQGALVLGQSLRRHRLTRKLVVLITPQVSDLLRRILSKVFDEVIEVNLSADYIHLAFLKRPELGLTLTKLHCWTLTHYSKCVFLDADTLVLSNVDELFDRGEFSAAPDPGWPDCFNSGVFVFQPSLHTHKLLLQHAMEHGSFDGADQGLLNSFFRNWSTTDIHKHLPFIYNLSSNTMYTYSPAFKQFGSSAKVVHFLGSMKPWNYKYSVSSSQHQAAFLHLWWTVYQNNVLPLYK 265
                                    13        23        33        43        53        63 ||     75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225||     246       256         
                                                                                        65|                                                                                                                                                           226|                           
                                                                                         68                                                                                                                                                            238

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (7, 7)

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	Sites
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		AC2	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Glu A:121 - Phe A:122	[ RasMol ]
		Glu B:121 - Phe B:122	[ RasMol ]

Biological Unit
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Description