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(-) Description

Title :  NMEDAH7PS R126S VARIANT
 
Authors :  P. J. Cross, L. C. Heyes, S. Zhang, A. R. Nazmi, E. J. Parker
Date :  03 Dec 14  (Deposition) - 13 Jan 16  (Release) - 10 Feb 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Transferase, Shikimate Pathway, Dahps, Dah7Ps (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. J. Cross, L. C. Heyes, S. Zhang, A. R. Nazmi
The Functional Unit Of Neisseria Meningitidis 3-Deoxy-D- Arabino-Heptulosonate 7-Phosphate Synthase Is Dimeric.
Plos One V. 11 45187 2016
PubMed-ID: 26828675  |  Reference-DOI: 10.1371/JOURNAL.PONE.0145187

(-) Compounds

Molecule 1 - PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE
    Chains: A, B, C, D
    EC Number: 2.5.1.54
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Mutation: YES
    Organism Scientific: NEISSERIA MENINGITIDIS
    Organism Taxid: 487
    Synonym: 3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE, DAHP SYNTHASE, PHOSPHO-2-KETO-3-DEOXYHEPTONATE ALDOLASE, DAH7PS

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 15)

Asymmetric/Biological Unit (4, 15)
No.NameCountTypeFull Name
1MN4Ligand/IonMANGANESE (II) ION
2PEG4Ligand/IonDI(HYDROXYETHYL)ETHER
3PEP4Ligand/IonPHOSPHOENOLPYRUVATE
4SO43Ligand/IonSULFATE ION

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWARECYS B:63 , HIS B:270 , GLU B:304 , ASP B:324 , PEP B:1351 , HOH B:2022BINDING SITE FOR RESIDUE MN B1350
02AC2SOFTWARECYS C:63 , HIS C:270 , GLU C:304 , ASP C:324 , PEP C:1351BINDING SITE FOR RESIDUE MN C1350
03AC3SOFTWARECYS D:63 , HIS D:270 , GLU D:304 , ASP D:324 , PEP D:1351 , HOH D:2019BINDING SITE FOR RESIDUE MN D1350
04AC4SOFTWARECYS A:63 , HIS A:270 , GLU A:304 , ASP A:324 , PEP A:1352 , HOH A:2039BINDING SITE FOR RESIDUE MN A1351
05AC5SOFTWAREARG A:94 , TYR A:96 , LYS A:99 , GLU A:145 , GLY A:165 , ALA A:166 , ARG A:167 , LYS A:188 , ARG A:236 , HIS A:270 , GLU A:304 , MN A:1351 , HOH A:2039 , HOH A:2076 , HOH A:2116 , HOH A:2133 , HOH A:2138BINDING SITE FOR RESIDUE PEP A1352
06AC6SOFTWAREARG B:94 , TYR B:96 , LYS B:99 , GLU B:145 , GLY B:165 , ALA B:166 , ARG B:167 , LYS B:188 , ARG B:236 , HIS B:270 , GLU B:304 , MN B:1350 , HOH B:2022 , HOH B:2048 , HOH B:2081 , HOH B:2093BINDING SITE FOR RESIDUE PEP B1351
07AC7SOFTWAREARG D:94 , TYR D:96 , LYS D:99 , GLU D:145 , GLY D:165 , ALA D:166 , ARG D:167 , LYS D:188 , ARG D:236 , HIS D:270 , MN D:1350 , HOH D:2019 , HOH D:2046 , HOH D:2077BINDING SITE FOR RESIDUE PEP D1351
08AC8SOFTWAREARG C:94 , TYR C:96 , LYS C:99 , GLU C:145 , GLY C:165 , ALA C:166 , ARG C:167 , LYS C:188 , ARG C:236 , HIS C:270 , MN C:1350 , HOH C:2074 , HOH C:2104 , HOH C:2116BINDING SITE FOR RESIDUE PEP C1351
09AC9SOFTWAREARG B:101 , THR B:102 , HOH B:2056BINDING SITE FOR RESIDUE SO4 B1352
10BC1SOFTWAREARG A:101 , THR A:102 , HOH A:2085 , HOH A:2242BINDING SITE FOR RESIDUE SO4 A1353
11BC2SOFTWAREARG D:101 , THR D:102BINDING SITE FOR RESIDUE SO4 D1352
12BC3SOFTWARETRP B:106 , ASP B:112 , LEU B:115 , ASP B:116 , GLY B:117BINDING SITE FOR RESIDUE PEG B1353
13BC4SOFTWARELEU A:19 , ALA A:23 , GLU A:27 , PEG A:1355 , LEU C:19 , ALA C:23 , GLU C:27BINDING SITE FOR RESIDUE PEG A1354
14BC5SOFTWARETYR A:26 , GLU A:27 , PEG A:1354 , LEU C:19 , ASN C:122BINDING SITE FOR RESIDUE PEG A1355
15BC6SOFTWAREALA A:221 , ILE A:222 , LYS B:16 , GLU B:17 , LEU B:18BINDING SITE FOR RESIDUE PEG B1354

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UCG)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4UCG)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UCG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UCG)

(-) Exons   (0, 0)

(no "Exon" information available for 4UCG)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:336
                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.....eeeeee.....hhhhhhhhhhhhhhhhhhh...eeeeee.........................hhhhhhhhhhhhhhhhhhh...eeee.....hhhhhhhhh.eeee......hhhhhhhhhhh...eeee......hhhhhhhhhhhh...eeeee.....eeeee......eeeee........hhhhhhhhhhhhhhh.....eeee.hhhhh..hhhhhhhhhhhhhhhhhhh...eeeeeee.......................hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ucg A  15 VKELLPPIAHLYELPISKEASGLVHRTRQEISDLVHGRDKRLLVIIGPCSIHDPKAALEYAERLLKLRKQYENELLIVMRVYFEKPRTTVGWKGLINDPHLDGTFDINFGLSQARSLLLSLNNMGMPASTEFLDMITPQYYADLISWGAIGARTTESQVHRELASGLSCPVGFKNGTDGNLKIAIDAIGAASHSHHFLSVTKAGHSAIVHTGGNPDCHVILRGGKEPNYDAEHVSEAAEQLRAAGVTDKLMIDCSHANSRKDYTRQMEVAQDIAAQLEQDGGNIMGVMVESHLVEGRQDKPEVYGKSITDACIGWGATEELLALLAGANKKRMARA 350
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344      


Chain B from PDB  Type:PROTEIN  Length:334
                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.....eeeeee.....hhhhhhhhhhhhhhhhhhh...eeeeee.........................hhhhhhhhhhhhhhhhhhh...eeee.....hhhhhhhhh.eeee......hhhhhhhhhh....eeee......hhhhhhhhhhhhh..eeeee.....eeeee......eeeee........hhhhhhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhhhhhh...eeeeeee.......................hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ucg B  16 KELLPPIAHLYELPISKEASGLVHRTRQEISDLVHGRDKRLLVIIGPCSIHDPKAALEYAERLLKLRKQYENELLIVMRVYFEKPRTTVGWKGLINDPHLDGTFDINFGLSQARSLLLSLNNMGMPASTEFLDMITPQYYADLISWGAIGARTTESQVHRELASGLSCPVGFKNGTDGNLKIAIDAIGAASHSHHFLSVTKAGHSAIVHTGGNPDCHVILRGGKEPNYDAEHVSEAAEQLRAAGVTDKLMIDCSHANSRKDYTRQMEVAQDIAAQLEQDGGNIMGVMVESHLVEGRQDKPEVYGKSITDACIGWGATEELLALLAGANKKRMAR 349
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345    


Chain C from PDB  Type:PROTEIN  Length:335
                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.....eeeeee.....hhhhhhhhhhhhhhhhhhh...eeeeee.........................hhhhhhhhhhhhhhhhhhhh..eeee.....hhhhhhhhh.eeee......hhhhhhhhhhh...eeee......hhhhhhhhhhhhh..eeeee.....eeeee......eeeee........hhhhhhhhhhhhhhh.....eeee.hhhhhh.hhhhhhhhhhhhhhhhhhh...eeeeeee.......................hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ucg C  15 VKELLPPIAHLYELPISKEASGLVHRTRQEISDLVHGRDKRLLVIIGPCSIHDPKAALEYAERLLKLRKQYENELLIVMRVYFEKPRTTVGWKGLINDPHLDGTFDINFGLSQARSLLLSLNNMGMPASTEFLDMITPQYYADLISWGAIGARTTESQVHRELASGLSCPVGFKNGTDGNLKIAIDAIGAASHSHHFLSVTKAGHSAIVHTGGNPDCHVILRGGKEPNYDAEHVSEAAEQLRAAGVTDKLMIDCSHANSRKDYTRQMEVAQDIAAQLEQDGGNIMGVMVESHLVEGRQDKPEVYGKSITDACIGWGATEELLALLAGANKKRMAR 349
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344     


Chain D from PDB  Type:PROTEIN  Length:334
                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.....eeeeee.....hhhhhhhhhhhhhhhhhhh...eeeeee.........................hhhhhhhhhhhhhhhhhhh...eeee....hhhhhhhh.eeeeee......hhhhhhhhhhh...eeee......hhhhhhhhhhhhh..eeeee.....eeeee......eeeee........hhhhhhhhhhhhhhh.....eeee.hhhhh..hhhhhhhhhhhhhhhhhhh...eeeeeee.......................hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ucg D  16 KELLPPIAHLYELPISKEASGLVHRTRQEISDLVHGRDKRLLVIIGPCSIHDPKAALEYAERLLKLRKQYENELLIVMRVYFEKPRTTVGWKGLINDPHLDGTFDINFGLSQARSLLLSLNNMGMPASTEFLDMITPQYYADLISWGAIGARTTESQVHRELASGLSCPVGFKNGTDGNLKIAIDAIGAASHSHHFLSVTKAGHSAIVHTGGNPDCHVILRGGKEPNYDAEHVSEAAEQLRAAGVTDKLMIDCSHANSRKDYTRQMEVAQDIAAQLEQDGGNIMGVMVESHLVEGRQDKPEVYGKSITDACIGWGATEELLALLAGANKKRMAR 349
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UCG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UCG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UCG)

(-) Gene Ontology  (8, 8)

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        Q9K169_NEIMB | Q9K169: 4hsn 4hso 4ixx 4uc5 4uma 4umb 4umc 5cz0 5czs 5czt 5d02 5d03 5d04 5d05 5d09 5dcb 5dcd 5dce

(-) Related Entries Specified in the PDB File

4uc5 NEISSERIA MENINGITIDIS DAH7PS-PHENYLALANINE REGULATED