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(-) Description

Title :  HSMCAK MOTOR DOMAIN COMPLEX
 
Authors :  J. P. I. Welburn, S. K. Talapatra
Date :  12 Aug 14  (Deposition) - 06 May 15  (Release) - 06 May 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A,B,C,D,P
Biol. Unit 1:  A,B,P  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Mcak, Kif2C, Complex, Motor Domain, Cell Cycle (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. P. I. Welburn, S. K. Talapatra
Mcak Motor Domain Complex
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - KINESIN-LIKE PROTEIN KIF2C
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Taxid: 511693
    Fragment: UNP RESIDUES 225-593
    Gene: KIF2C, KNSL6
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: KINESIN-LIKE PROTEIN 6,MITOTIC CENTROMERE-ASSOCIATED KINESIN,MCAK
 
Molecule 2 - KINESIN-LIKE PROTEIN KIF2C
    Chains: P
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: PET28A-LIC
    Expression System Taxid: 511693
    Fragment: UNP RESIDUES 709-720
    Gene: KIF2C, KNSL6
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: KINESIN-LIKE PROTEIN 6,MITOTIC CENTROMERE-ASSOCIATED KINESIN,MCAK

 Structural Features

(-) Chains, Units

  12345
Asymmetric Unit : ABCDP
Biological Unit 1 (1x): AB  P
Biological Unit 2 (1x):   CD 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 11)

Asymmetric Unit (2, 11)
No.NameCountTypeFull Name
1ADP4Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MG7Ligand/IonMAGNESIUM ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR A:355 , ADP A:602 , HOH A:704binding site for residue MG A 601
02AC2SOFTWAREARG A:264 , PRO A:267 , GLN A:349 , THR A:350 , GLY A:351 , SER A:352 , GLY A:353 , LYS A:354 , THR A:355 , HIS A:356 , MG A:601binding site for residue ADP A 602
03AC3SOFTWARELEU A:273 , GLU A:277 , HOH A:708 , HOH A:714binding site for residue MG A 603
04AC4SOFTWAREARG B:264 , ARG B:266 , PRO B:267 , GLN B:349 , THR B:350 , GLY B:351 , SER B:352 , GLY B:353 , LYS B:354 , THR B:355 , HIS B:356 , MG B:603 , HOH B:713binding site for residue ADP B 601
05AC5SOFTWARELEU B:243 , HOH B:704binding site for residue MG B 602
06AC6SOFTWARETHR B:355 , ADP B:601 , HOH B:701 , HOH B:717binding site for residue MG B 603
07AC7SOFTWARETHR C:355 , ARG C:456 , SER C:467 , ADP C:602 , HOH C:707binding site for residue MG C 601
08AC8SOFTWAREARG C:266 , PRO C:267 , THR C:350 , GLY C:351 , SER C:352 , GLY C:353 , LYS C:354 , THR C:355 , HIS C:356 , MG C:601 , HOH C:707binding site for residue ADP C 602
09AC9SOFTWARETHR D:355 , ADP D:602 , HOH D:701 , HOH D:710 , HOH D:712binding site for residue MG D 601
10AD1SOFTWAREARG D:264 , ARG D:266 , GLN D:349 , GLY D:351 , SER D:352 , GLY D:353 , LYS D:354 , THR D:355 , HIS D:356 , MG D:601 , HOH D:701 , HOH D:706binding site for residue ADP D 602

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UBF)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Asn D:229 -Trp D:230
2Thr D:509 -Arg D:510
3Glu D:512 -Gly D:513
4Thr D:537 -Pro D:538
5Leu P:710 -Glu P:711
6Glu P:711 -Glu P:712

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UBF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UBF)

(-) Exons   (0, 0)

(no "Exon" information available for 4UBF)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:309
                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhh....................eeee...hhhhhh......ee......eeeeeeee.....eeeeeeee....ee....hhhhhhhhhhhhhhhhhh...eeeeeeee....hhhhhhh.hhhhhhhhhhhhh...eeeeeeeee.....ee........eee..eee....eee.hhhhhhhhhhhhhh....eeeeeeeee....eeeeeeeeeeee....hhhhhhhhhhhhhhh............hhhhhhhhhhhh........eeee..hhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ubf A 228 PNWEFARMIKEFRATLECHPLTMTDPIEEHRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGKGIYAMASRDVFLLKGLEVYVTFFEIYNGKLFDLLNKKAKLRVLEVQVVGLQEHLVNSADDVIKMIDMGSACRRSHACFQIILRAKGRMHGKFSLVDLAGNEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKE 587
                                   237       247       257       267       277       287       297       307       317       327       337       347       357 ||    378      |396       406       416      |431       441       451    || 473       483       493   ||  518       528       538       548       558       568       578         
                                                                                                                                                             359|           385|                          423|                        456|                         497|                                                                          
                                                                                                                                                              371            394                           429                         469                          513                                                                          


Chain B from PDB  Type:PROTEIN  Length:319
                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh...............eeeeeee...hhhhhhh......eeee..eeeeee..........eeeeee..eee....hhhhhhh..hhhhhhhhh...eeeeee...............hhhhhhhhhhhhhhhh.............eeeee..eeee.....ee.eeeee...eee........hhhhhhhhhhhhhhhhhhhhheeeeeeeee....eeeeeeeee......hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhh...eeeeeeeee....hhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ubf B 229 NWEFARMIKEFRATLECHPLTMTDPIEEHRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGSKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNKKAKLRVLEDGQVQVVGLQEHLVNSADDVIKMIDMGSACRNSSRSHACFQIILRAKGRMHGKFSLVDLAGNEGAEINKSLLALKECIRALGQNTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKE 587
                                   238       248       258       268       278       288       299       309       319       329       339       349       359|      379       389       399       409       419     ||431       441       451    || 470       480       490      |515       525       538       548       558       568       578         
                                                                                              297|                                                         359|                                                    425|                         456|                            497|                 533|                                                  
                                                                                               299                                                          370                                                     428                          466                             513                  537                                                  


Chain C from PDB  Type:PROTEIN  Length:322
                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh..........eee..ee...ee.....hhhhhh....ee.....eeeeeeeee.....eeeeeeeee.........hhhhhhhhhhhhhhhhhhh..eeeeeeee....hhhhhh..hhhhhhhhhhhhhhhh........eeeeeeeeee..eeee.....eee.................ee.hhhhhhhhhhhhhhhh.....eeeeeeeee....eeeeeeeee.......hhhhhhhhhhhhhhhhhh........hhhhhhhhhhh......ee..eee......hhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ubf C 229 NWEFARMIKEFRATLECHPLTMTDPIEEHRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNKKAKLRVLEDGQQVQVVGLQEHLVNSADDVIKMIDMGSACRNSSRSHACFQIILRAKGRMHGKFSLVDLAGNEGAEINKSLLALKECIRALGQNKATPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKE 587
                                   238       248       258       268       278       288       298       308       318       328       338       348       358||     379       389       399       409       419     ||430       440       450     ||469       479       489       514       524       534||     545       555       565       575       585  
                                                                                                                                                            359|                                                   425|                          456|                            497|                   535|                                                  
                                                                                                                                                             371                                                    427                           466                             513                    537                                                  


Chain D from PDB  Type:PROTEIN  Length:322
                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh....................ee...hhhhhhh.....ee.....eeeeeeeee....eeeeeeeee.........hhhhhhhh......hhhhhh..eeeeeee............hhhhhhhhhhh....hhhhh....eeeeeeeee............................hhhhhhhhhhhhhhhh.....eeeeeeeee....eeeeeeeee...............hhhhhh.hhhhhhhhhhh.........hhhhhhhhhhh....eeeeeeee.....hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ubf D 229 NWEFARMIKEFRATLECHPLTMTDPIEEHRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNKKAKLRVQVVGLQEHLVNSADDVIKMIDMGSACRNSSRSHACFQIILRAKGRMHGKFSLVDLAGNEADRQTRMEGAEINKSLLALKECIRALGQKAHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKE 587
                                   238       248       258       268       278       288       298|      309       319       329       339       349       359|      380       390       400       410       420||     438       448       467       477       487       497|      514       524       535       545       555       565       575       585  
                                                                                               298|                                                        359|                                               421|                       456|                            497|                        532|                                                     
                                                                                                300                                                         371                                                430                        466                             505                         534                                                     


Chain P from PDB  Type:PROTEIN  Length:7
                                       
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ....... Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                 4ubf P 710 LEEQASR 716
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UBF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UBF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UBF)

(-) Gene Ontology  (34, 34)

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 Related Entries

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        KIF2C_HUMAN | Q99661: 2heh 4y05

(-) Related Entries Specified in the PDB File

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