4UAJ - JenaLib

Title :   CRYSTAL STRUCTURE OF NQRF IN HEXAGONAL SPACE GROUP

Authors :   G. Fritz

Date :   10 Aug 14 (Deposition) - 05 Aug 15 (Release) - 05 Aug 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.70

Chains :   Asym./Biol. Unit : A

Keywords :   Vibrio Cholerae, Sodium Translocation, Nqr, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Steuber, G. Vohl, M. S. Casutt, T. Vorburger, K. Diederichs, G. Frit
Structure Of The V. Cholerae Na+-Pumping Nadh:Quinone Oxidoreductase.
Nature V. 516 62 2014
PubMed-ID: 25471880 | Reference-DOI: 10.1038/NATURE14003

Compounds

Molecule 1 - NA(+)-TRANSLOCATING NADH-QUINONE REDUCTASE SUBUNIT F
	Chains	:	A
	EC Number	:	1.6.5.-
	Engineered	:	YES
	Expression System	:	VIBRIO CHOLERAE
	Expression System Plasmid	:	PBAD
	Expression System Taxid	:	666
	Fragment	:	UNP RESIDUES 129-408
	Gene	:	NQRF, VC0395_A1879, VC395_2406
	Organism Scientific	:	VIBRIO CHOLERAE
	Organism Taxid	:	666
	Strain	:	ATCC 39541 / CLASSICAL OGAWA 395 / O395
	Synonym	:	NA(+)-TRANSLOCATING NQR SUBUNIT F,NQR COMPLEX SUBUNIT F,NQR- 1 SUBUNIT F

Structural Features

Chains, Units

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (2, 3)

Asymmetric/Biological Unit (2, 3)

No.	Name	Count	Type	Full Name
1	FAD	1	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	SO4	2	Ligand/Ion	SULFATE ION

Sites (3, 3)

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:210 , ALA A:211 , TYR A:212 , SER A:213 , ASN A:227 , VAL A:228 , ARG A:229 , ALA A:231 , THR A:232 , PRO A:233 , PRO A:234 , VAL A:240 , PRO A:241 , GLY A:243 , GLN A:244 , MET A:245 , SER A:246 , PHE A:406 , HOH A:610 , HOH A:614 , HOH A:615 , HOH A:631	binding site for residue FAD A 501
2	AC2	SOFTWARE	LYS A:143 , TYR A:319 , VAL A:320 , GLU A:321 , HOH A:612	binding site for residue SO4 A 502
3	AC3	SOFTWARE	ARG A:229 , GLY A:282 , ARG A:312 , PRO A:380	binding site for residue SO4 A 503

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:280
                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeee....eeeeeee.hhhh........eeeeee..eeee.hhh..hhhhhhhhhhhhhhh.eeee...eeeeee.........eeeeeee.............hhhhhhhhhh....eeeeeeee..........eeeeeee..hhhhhhhhhhhhhh.......eeeeeee.hhhhh.hhhhhhhhhhhh..eeeeeee...hhhhh...ee.hhhhhhhhhh.........eeeeee.hhhhhhhhhhhhhh...hhh.eee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uaj A 129 GVKKWECTVISNDNKATFIKELKLAIPDGESVPFRAGGYIQIEAPAHHVKYADFDVPEKYRGDWDKFNLFRYESKVDEPIIRAYSMANYPEEFGIIMLNVRIATPPPNNPNVPPGQMSSYIWSLKAGDKCTISGPFGEFFAKDTDAEMVFIGGGAGMAPMRSHIFDQLKRLKSKRKMSYWYGARSKREMFYVEDFDGLAAENDNFVWHCALSDPQPEDNWTGYTGFIHNVLYENYLKDHEAPEDCEYYMCGPPMMNAAVINMLKNLGVEEENILLDDFGG 408
                                   138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (14, 14)

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	Ligands, Modified Residues, Ions
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		SO4	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

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	Cis Peptide Bonds
		Gly A:262 - Pro A:263	[ RasMol ]

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Description