4UA3 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF SELENOMETHIONINE LABELED SPNATD

Authors :   R. S. Magin, G. P. Liszczak, R. Marmorstein

Date :   07 Aug 14 (Deposition) - 28 Jan 15 (Release) - 11 Feb 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.85

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Acetyltransferase, Gnat Fold, N-Terminal Acetylation, Acetyl-Coa, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. S. Magin, G. P. Liszczak, R. Marmorstein
The Molecular Basis For Histone H4- And H2A-Specific Amino-Terminal Acetylation By Natd.
Structure V. 23 332 2015
PubMed-ID: 25619998 | Reference-DOI: 10.1016/J.STR.2014.10.025

Molecule 1 - UNCHARACTERIZED N-ACETYLTRANSFERASE C825.04C
	Chains	:	A, B
	EC Number	:	2.3.1.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 13-204
	Gene	:	SPCC825.04C
	Organism Common	:	FISSION YEAST
	Organism Scientific	:	SCHIZOSACCHAROMYCES POMBE
	Organism Taxid	:	284812
	Strain	:	972 / ATCC 24843

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 12)

No.	Name	Count	Type	Full Name
1	ACE	1	Mod. Amino Acid	ACETYL GROUP
2	CL	1	Ligand/Ion	CHLORIDE ION
3	COA	2	Ligand/Ion	COENZYME A
4	MSE	8	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (2, 5)

No.	Name	Count	Type	Full Name
1	ACE	-1	Mod. Amino Acid	ACETYL GROUP
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	COA	1	Ligand/Ion	COENZYME A
4	MSE	4	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (3, 6)

No.	Name	Count	Type	Full Name
1	ACE	1	Mod. Amino Acid	ACETYL GROUP
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	COA	1	Ligand/Ion	COENZYME A
4	MSE	4	Mod. Amino Acid	SELENOMETHIONINE

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ILE A:120 , GLN A:121 , LEU A:122 , ARG A:127 , GLY A:128 , ARG A:129 , ASN A:130 , VAL A:131 , GLY A:132 , LYS A:133 , ASN A:159 , ASN A:161 , ASN A:164 , PHE A:165 , TYR A:166 , HIS A:168 , PHE A:169 , CL A:302 , HOH A:470 , HOH A:476 , HOH A:524 , ARG B:13 , LEU B:160 , ASN B:164 , COA B:301	binding site for residue COA A 301
2	AC2	SOFTWARE	VAL A:155 , PHE A:156 , ASN A:159 , COA A:301 , ARG B:13	binding site for residue CL A 302
3	AC3	SOFTWARE	ARG A:13 , LEU A:160 , ASN A:161 , ASN A:164 , COA A:301 , ILE B:120 , GLN B:121 , LEU B:122 , ARG B:127 , GLY B:128 , ARG B:129 , ASN B:130 , VAL B:131 , GLY B:132 , LYS B:133 , ASN B:159 , ASN B:161 , ALA B:162 , ASN B:164 , PHE B:165 , TYR B:166 , HIS B:168 , PHE B:169 , HOH B:449 , HOH B:453 , HOH B:456 , HOH B:468 , HOH B:481 , HOH B:498 , HOH B:509	binding site for residue COA B 301

(no "SS Bond" information available for 4UA3)

(no "Cis Peptide Bond" information available for 4UA3)

(no "SAP(SNP)/Variant" information available for 4UA3)

(no "PROSITE Motif" information available for 4UA3)

(no "Exon" information available for 4UA3)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:186
                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........hhhhhhh..eeeeee...hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh....eeeeeee.....eeeeeeeeeeee..eeeeeeeeeee.hhhh..hhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh..ee.......ee.....ee...eeeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ua3 A  12 SRRmVTLEDVDFLKNLGVWVEIYHHLEKGLLQQCFNLVKKNmEALYRQSSFGWDDSEKLKEmEmEKLEYICIFEKTSKKLVGFLSFEDTVEAGLTCLYIYEIQLDEHIRGRNVGKWLLKNASILAYRRNLKYIFLTVFSANLNALNFYHHFDFVPHESSPQEKKFRSGKVIHPDYYILYTKSRKDW 204
                               ||   28        38        48        58 |      68        78 | |    88        98       108       118       128       138       148       158       168       178       188       198      
                               ||                                   60-MSE              80-MSE                                                                                                                        
                              15-MSE                                                      82-MSE                                                                                                                      
                               23

Chain B from PDB  Type:PROTEIN  Length:194
                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh.........hhhhhhh..eeeeee...hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh....eeeeeee.....eeeeeeeeeeee..eeeeeeeeeee.hhhh..hhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh..ee.......ee.....ee...eeeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ua3 B  11 xSRRmKTQEIKNVTLEDVDFLKNLGVWVEIYHHLEKGLLQQCFNLVKKNmEALYRQSSFGWDDSEKLKEmEmEKLEYICIFEKTSKKLVGFLSFEDTVEAGLTCLYIYEIQLDEHIRGRNVGKWLLKNASILAYRRNLKYIFLTVFSANLNALNFYHHFDFVPHESSPQEKKFRSGKVIHPDYYILYTKSRKDW 204
                            |   |   20        30        40        50        60        70        80 |      90       100       110       120       130       140       150       160       170       180       190       200    
                           11-ACE                                           60-MSE              80-MSE                                                                                                                        
                               15-MSE                                                             82-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4UA3)

(no "CATH Domain" information available for 4UA3)

(no "Pfam Domain" information available for 4UA3)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		ACE	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		CL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		COA	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		MSE	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4ua3)

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	4ua3
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	NAA40_SCHPO \| Q9USH6
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	2.3.1.-
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	NAA40_SCHPO \| Q9USH6
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

(no "Entries Sharing at Least One Protein Chain" available for 4UA3)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 12)

Sites (3, 3)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (11, 11)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File