4U9S - JenaLib

Title :   CRYSTAL STRUCTURE OF NQRC FROM VIBRIO CHOLERAE

Authors :   G. Fritz

Date :   06 Aug 14 (Deposition) - 03 Dec 14 (Release) - 17 Dec 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.70

Chains :   Asym./Biol. Unit : C

Keywords :   Sodium Translocation, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Steuber, G. Vohl, M. S. Casutt, T. Vorburger, K. Diederichs, G. Frit
Structure Of The V. Cholerae Na+-Pumping Nadh:Quinone Oxidoreductase.
Nature V. 516 62 2014
PubMed-ID: 25471880 | Reference-DOI: 10.1038/NATURE14003

Compounds

Molecule 1 - NA(+)-TRANSLOCATING NADH-QUINONE REDUCTASE SUBUNIT C
	Chains	:	C
	EC Number	:	1.6.5.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Taxid	:	469008
	Fragment	:	UNP RESIDUES 44-257
	Gene	:	NQRC, VC0395_A1882, VC395_2409
	Organism Scientific	:	VIBRIO CHOLERAE
	Organism Taxid	:	666
	Strain	:	ATCC 39541 / CLASSICAL OGAWA 395 / O395
	Synonym	:	NA(+)-TRANSLOCATING NQR SUBUNIT C,NQR COMPLEX SUBUNIT C,NQR- 1 SUBUNIT C

Structural Features

Chains, Units

		1
Asymmetric/Biological Unit	:	C

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (3, 3)

Asymmetric/Biological Unit (3, 3)

No.	Name	Count	Type	Full Name
1	BR	1	Ligand/Ion	BROMIDE ION
2	FMN	1	Ligand/Ion	FLAVIN MONONUCLEOTIDE
3	GOL	1	Ligand/Ion	GLYCEROL

Sites (3, 3)

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LEU C:145 , TRP C:146 , THR C:173 , LEU C:176 , GLY C:177 , GLY C:223 , ALA C:224 , THR C:225 , LEU C:226 , THR C:227 , HOH C:410 , HOH C:412 , HOH C:420 , HOH C:435 , HOH C:531 , HOH C:532	binding site for residue FMN C 301
2	AC2	SOFTWARE	PHE C:67 , ALA C:89	binding site for residue GOL C 302
3	AC3	SOFTWARE	GLN C:93 , ALA C:119	binding site for residue BR C 303

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain C from PDB  Type:PROTEIN  Length:219
                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh.....hhhhhhhhhhhheeeeeee.....ee.......hhhhhhhhhh.eee...........eee.eeeeeeeee..eeeeeeeeeeee....eeeeeeeee.....eeeeeeee......hhhhhhhhhhhhh...............eee..........eee....hhhhhhhhhhhhhhhh....hhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4u9s C  39 PGHLRDKQSKILQVAGIEAKGSKQIVELFNKSIEPRLVDFNTGDFVEGDAANYDQRKAAKEASESIKLTAEQDKAKIQRRANVGVVYLVKDGDKTSKVILPVHGNGLWSMMYAFVAVETDGNTVSGLTYYEQGETPGLGGEVENPAWRAQWVGKKLFDENHKPAIKIVKGGAPQGSEHGVDGLSGATLTSNGVQNTFDFWLGDMGFGPFLTKVRDGGLN 257
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (11, 11)

Visualization

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	Ligands, Modified Residues, Ions
		BR	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		FMN	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		GOL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
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		AC3	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4u9s)

Still Images

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	4u9s
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		Orientation in Membranes	:	OPM
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	1.6.5.-
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Description