4U7L - JenaLib

Title :   LRIG1 EXTRACELLULAR DOMAIN: STRUCTURE AND FUNCTION ANALYSIS

Authors :   Y. Xu

Date :   31 Jul 14 (Deposition) - 08 Apr 15 (Release) - 13 May 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym./Biol. Unit : A

Keywords :   Stem Cell Marker, Egfr Inhibition, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Xu, P. Soo, F. Walker, H. H. Zhang, N. Redpath, C. W. Tan, N. A. Nicola, T. E. Adams, T. P. Garrett, J. G. Zhang, A. W. Burgess
Lrig1 Extracellular Domain: Structure And Function Analysis
J. Mol. Biol. V. 427 1934 2015
PubMed-ID: 25765764 | Reference-DOI: 10.1016/J.JMB.2015.03.001

Compounds

Molecule 1 - LEUCINE-RICH REPEATS AND IMMUNOGLOBULIN-LIKE DOMAINS PROTEIN 1
	Chains	:	A
	Engineered	:	YES
	Expression System	:	SPODOPTERA FRUGIPERDA
	Expression System Common	:	FALL ARMYWORM
	Expression System Taxid	:	7108
	Fragment	:	LRR REPEATS, RESIDUES 41-494
	Gene	:	LRIG1, LIG1
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	LIG-1

Structural Features

Chains, Units

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (2, 7)

Sites (6, 6)

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASN A:179 , ARG A:180 , GLN A:203	binding site for residue CL A 507
2	AC2	SOFTWARE	ASP A:13 , GLY A:15 , GLY A:16 , ASN A:34 , SER A:36 , HOH A:601	binding site for Mono-Saccharide NAG A 501 bound to ASN A 34
3	AC3	SOFTWARE	ASN A:110 , ARG A:134	binding site for Mono-Saccharide NAG A 502 bound to ASN A 110
4	AC4	SOFTWARE	ARG A:184 , ASN A:206	binding site for Mono-Saccharide NAG A 503 bound to ASN A 206
5	AC5	SOFTWARE	TYR A:228 , SER A:251 , ASN A:252	binding site for Poly-Saccharide residues NAG A 504 through NAG A 505 bound to ASN A 252
6	AC6	SOFTWARE	ASN A:278	binding site for Mono-Saccharide NAG A 506 bound to ASN A 278

SS Bonds (4, 4)

Cis Peptide Bonds (3, 3)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:455
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee..eee..................eee.........hhhhh.......eee...........hhhhhhhh.eee.........hhhhhh......eee.......eehhhhh.......eee.......ee....hhhhh....eee....................eee.......ee............eee.......ee............eee.........hhhhhh......eee..........hhhhhhh....eee.......ee............eee.......ee............eee......hhhhhh............eee.......eehhhhhh......eee.......ee............eeeeeeeeee......hhhhhhhhh.....eeeeeee............hhhhh........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4u7l A   1 CPSRCTCSGDSLDCGGRGLAALPGDLPSSTRSLNLSYNKLSEIDPAGFEDLPNLQEVYLNNNELTAVPSLGAASSHVVSLFLQHNKIRSVEGSQLKAYLSLEVLDLSLNNITEVRNTCFPHGPPIKELNLAGNRIGTLELGAFDGLSRSLLTLRLSKNRITQLPVRAFKLPRLTQLDLNRNRIRLIEGLTFQGLNSLEVLKLQRNNISKLTDGAFWGLSKMHVLHLEYNSLVEVNSGSLYGLTALHQLHLSNNSIARIHRKGWSFCQKLHELVLSFNNLTRLDEESLAELSSLSVLRLSHNSISHIAEGAFKGLRSLRVLDLDHNEISGTIEDTSGAFSGLDSLSKLTLFGNKIKSVAKRAFSGLEGLEHLNLGGNAIRSVQFDAFVKMKNLKELHISSDSFLCDCQLKWLPPWLIGRMLQAFVTATCAHPESLKGQSIFSVPPESFVCDDFLKA 455
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (5, 5)

Visualization

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Asymmetric/Biological Unit
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	Ligands, Modified Residues, Ions
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	Sites
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		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Glu A:49 - Asp A:50	[ RasMol ]
		Gly A:24 - Asp A:25	[ RasMol ]
		His A:430 - Pro A:431	[ RasMol ]

Still Images

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	4u7l
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	LRIG1_HUMAN \| Q96JA1
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Description