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(-) Description

Title :  CRYSTAL STRUCTURE OF VBP LEUCINE ZIPPER WITH BOUND ARYLSTIBONIC ACID
 
Authors :  J. R. Stagno, X. Ji
Date :  25 Jul 14  (Deposition) - 06 Aug 14  (Release) - 06 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.30
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Leucine Zipper, B-Zip Transcription Factor, Vitellogenin Gene-Binding Protein (Vbp), Inhibitor, Transcription-Transcription Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Zhao, J. R. Stagno, L. Varticovski, E. Nimako, V. Rishi, K. Mckinnon R. Akee, R. H. Shoemaker, X. Ji, C. Vinson
P6981, An Arylstibonic Acid, Is A Novel Low Nanomolar Inhibitor Of Camp Response Element-Binding Protein Binding To Dna.
Mol. Pharmacol. V. 82 814 2012
PubMed-ID: 22851716  |  Reference-DOI: 10.1124/MOL.112.080820

(-) Compounds

Molecule 1 - VBP LEUCINE ZIPPER
    Chains: A, B
    Engineered: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
13CG1Ligand/Ion(2Z)-3-{3-[DIHYDROXY(OXIDO)-LAMBDA~5~-STIBANYL]PHENYL}PROP-2-ENOIC ACID

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:20 , ARG A:27 , HOH A:202 , HOH A:203 , HOH A:204 , HOH A:205binding site for residue 3CG A 101

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:33 -B:33

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4U5T)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4U5T)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 4U5T)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:37
                                                                    
               SCOP domains ------------------------------------- SCOP domains
               CATH domains ------------------------------------- CATH domains
               Pfam domains ------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------- PROSITE
                 Transcript ------------------------------------- Transcript
                  4u5t A  2 DPDLEIRAAFLEKENTALRTEVAELRKEVGRCKNIVS 38
                                    11        21        31       


Chain B from PDB  Type:PROTEIN  Length:37
                                                                    
               SCOP domains ------------------------------------- SCOP domains
               CATH domains ------------------------------------- CATH domains
               Pfam domains ------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------- PROSITE
                 Transcript ------------------------------------- Transcript
                  4u5t B  2 DPDLEIRAAFLEKENTALRTEVAELRKEVGRCKNIVS 38
                                    11        21        31
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4U5T)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4U5T)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4U5T)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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 Related Entries

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