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(-) Description

Title :  CRYSTAL STRUCTURE OF THE HUMAN CONDENSIN SMC HINGE DOMAIN HETERODIMER WITH SHORT COILED COILS
 
Authors :  S. Uchiyama, K. Kawahara, Y. Hosokawa, S. Fukakusa, H. Oki, S. Nakamura R. Takino, Y. Miyahara, T. Maruno, Y. Kobayashi, T. Ohkubo, K. Fukui
Date :  24 Jul 14  (Deposition) - 26 Aug 15  (Release) - 26 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.89
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Condensin, Smc, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Uchiyama, K. Kawahara, Y. Hosokawa, S. Fukakusa, H. Oki, S. Nakamura, M. Noda, R. Takino, Y. Miyahara, T. Maruno, Y. Kobayashi, T. Ohkubo, K. Fukui
Structural Basis For Dimer Information And Dna Recognition Of Human Smc Proteins
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 2
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 476-707
    Gene: SMC2, CAPE, SMC2L1, PRO0324
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: SMC-2,CHROMOSOME-ASSOCIATED PROTEIN E,HCAP-E,XCAP-E HOMOLOG
 
Molecule 2 - STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 4
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 566-809
    Gene: SMC4, CAPC, SMC4L1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: SMC-4,CHROMOSOME-ASSOCIATED POLYPEPTIDE C,HCAP-C,XCAP-C HOMOLOG

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4U4P)

(-) Sites  (0, 0)

(no "Site" information available for 4U4P)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4U4P)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4U4P)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4U4P)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4U4P)

(-) Exons   (0, 0)

(no "Exon" information available for 4U4P)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:232
                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhh.eeee.hhhhee.hhhhhhhhhhhhhhhhh.eee.hhhhhhhhhhhh.....eeeee.........hhhhhhhhhhhhh...eee....ee.hhhhhhhhhhhhh..eee.hhhhhhhhhh.......eee....eee...eeeee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4u4p A 475 MESLLEKRRQLSRDIGRLKETYEALLARFPNLRFAYKDPEKNWNRNCVKGLVASLISVKDTSATTALELVAGERLYNVVVDTEVTGKKLLERGELKRRYTIIPLNKISARCIAPETLRVAQNLVGPDNVHVALSLVEYKPELQKAMEFVFGTTFVCDNMDNAKKVAFDKRIMTRTVTLGGDVFDPHGTLSGGARSQAASILTKFQELKDVQDELRIKENELRALEEELAGLK 706
                                   484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704  


Chain B from PDB  Type:PROTEIN  Length:196
                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeee.hhhh..hhhhhhhhhhhhhhhh.eee.hhhhhhhhhhhhhhh...eeeeee.hhhhhhh.......hhhhh.hhhhhh...hhhhhhhhhhhhh..eee.hhhhhhhhhhh......eee....ee.....eee.............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4u4p B 572 FKSLVHDLFQKVEEAKSSLAMNRSRGKVLDAIIQEKKSGRIPGIYGRLGDLGAIDEKYDVAISSCCHALDYIVVDSIDIAQECVNFLKRQNIGVATFIGLDKMAVWAKKMTEIQTPENTPRLFDLVKVKDEKIRQAFYFALRDTLVADNLDQATRVAYQKDRRWRVVTLQGQIIEQSGTMTGGGSKVMKGRMGSSL 767
                                   581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4U4P)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4U4P)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4U4P)

(-) Gene Ontology  (23, 41)

Asymmetric/Biological Unit(hide GO term definitions)

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  4u4p
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 Related Entries

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