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(-) Description

Title :  CRYSTAL STRUCTURE OF MIDDLE DOMAIN OF EUKARYOTIC TRANSLATION INITIATION FACTOR EIF3B
 
Authors :  S. Zhang, J. P. Erzberger, T. Schaefer, N. Ban
Date :  15 Jul 14  (Deposition) - 10 Sep 14  (Release) - 10 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Translation Initiation, Eif3 Complex, Beta-Propeller, Translation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. P. Erzberger, F. Stengel, R. Pellarin, S. Zhang, T. Schaefer, C. H. Aylett, P. Cimermancic, D. Boehringer, A. Sali, R. Aebersold, N. Ban
Molecular Architecture Of The 40Seif1Eif3 Translation Initiation Complex.
Cell V. 158 1123 2014
PubMed-ID: 25171412  |  Reference-DOI: 10.1016/J.CELL.2014.07.044

(-) Compounds

Molecule 1 - EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT B
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: PRT1, CDC63, YOR361C
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: EIF3B,CELL CYCLE REGULATION AND TRANSLATION INITIATION PROTEIN,EUKARYOTIC TRANSLATION INITIATION FACTOR 3 90 KDA SUBUNIT, EIF3 P90,TRANSLATION INITIATION FACTOR EIF3 P90 SUBUNIT

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4U1F)

(-) Sites  (0, 0)

(no "Site" information available for 4U1F)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4U1F)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Trp A:297 -Pro A:298
2Gln A:352 -Pro A:353
3Val A:383 -Pro A:384
4Trp B:297 -Pro B:298
5Gln B:352 -Pro B:353
6Val B:383 -Pro B:384

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4U1F)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4U1F)

(-) Exons   (0, 0)

(no "Exon" information available for 4U1F)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:474
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhh.....eeeee...eeeeee.........eeeeee......eee......eeee...eeeeee....eeeeeee...eeeeee.....eeeeee...............hhhhh...eeeee.....eeeee.............ee.....eeeeee..eeeeee.hhh.....hhhhh.....eeee.................eeeeeee........eeeeeee....eeeeee...eeeeeeee.....eeeeeeeee......eeeeeeeee.......eeeee...eeeeeee......eeeeee............eeeeeeee.....eeeeeeeeee...eeee.....eeeeee.........eeeeee...................eeee........eeee......eeeee.........eeeeee....eeeeee.....eeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4u1f A 146 PSSSLKSWLMDDKVRDQFVLQDDVKTSVFWNSMFNEEDSLVESRENWSTNYVRFSPKGTYLFSYHQQGVTAWGGPNFDRLRRFYHPDVRNSSVSPNEKYLVTFSTEPIIVEEDNEFSPFTKKNEGHQLCIWDIASGLLMATFPVIKSPYLKWPLVRWSYNDKYCARMVGDSLIVHDATKNFMPLEAKALKPSGIRDFSFAPEGVKLQPFRNGDEPSVLLAYWTPETNNSACTATIAEVPRGRVLKTVNLVQVSNVTLHWQNQAEFLCFNVERHTKSGKTQFSNLQICRLTERDIPVEKVELKDSVFEFGWEPHGNRFVTISVHEVADMNYAIPANTIRFYAPETKKRWSLVKEIPKTFANTVSWSPAGRFVVVGALVGPNMRRSDLQFYDMDYPGEKNINDNNDVSASLKDVAHPTYSAATNITWDPSGRYVTAWSSSLKHKVEHGYKIFNIAGNLVKEDIIAGFKNFAWRPRP 625
                                   155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485    || 501       511       521       531       541       551       561       571       581       591       601       611       621    
                                                                                                                                                                                                                                                                                                                                                                                  490|                                                                                                                                
                                                                                                                                                                                                                                                                                                                                                                                   497                                                                                                                                


Chain B from PDB  Type:PROTEIN  Length:475
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh.....eeeee...eeeeee.........eeeeee......eee......eeee...eeeeee....eeeeeee...eeeeee.....eeeeee...............hhhhh...eeeee.....eeeee............eee.....eeeeee..eeeeee.hhh.....hhhhh......eee.................eeeeeee.......eeeeeeee....eeeeeee..eeeeeeee.....eeeeeeeee......eeeeeeeee.......eeeee...eeeeeee......eeeeee............eeeeeeee......eeeeeeeeee...eeee.....eeeeee.........eeeeee...................eeee........eeee.....eeeeee.........eeeee.....eeeeee.....eeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4u1f B 146 PSSSLKSWLMDDKVRDQFVLQDDVKTSVFWNSMFNEEDSLVESRENWSTNYVRFSPKGTYLFSYHQQGVTAWGGPNFDRLRRFYHPDVRNSSVSPNEKYLVTFSTEPIIVEEDNEFSPFTKKNEGHQLCIWDIASGLLMATFPVIKSPYLKWPLVRWSYNDKYCARMVGDSLIVHDATKNFMPLEAKALKPSGIRDFSFAPEGVKLQPFRNGDEPSVLLAYWTPETNNSACTATIAEVPRGRVLKTVNLVQVSNVTLHWQNQAEFLCFNVERHTKSGKTQFSNLQICRLTERDIPVEKVELKDSVFEFGWEPHGNRFVTISVHEVADMNYAIPANTIRFYAPETKEKRWSLVKEIPKTFANTVSWSPAGRFVVVGALVGPNMRRSDLQFYDMDYPGEKNINDNNDVSASLKDVAHPTYSAATNITWDPSGRYVTAWSSSLKHKVEHGYKIFNIAGNLVKEDIIAGFKNFAWRPRP 625
                                   155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485     ||500       510       520       530       540       550       560       570       580       590       600       610       620     
                                                                                                                                                                                                                                                                                                                                                                                   491|                                                                                                                                
                                                                                                                                                                                                                                                                                                                                                                                    497
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4U1F)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4U1F)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4U1F)

(-) Gene Ontology  (17, 17)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Gln A:352 - Pro A:353   [ RasMol ]  
    Gln B:352 - Pro B:353   [ RasMol ]  
    Trp A:297 - Pro A:298   [ RasMol ]  
    Trp B:297 - Pro B:298   [ RasMol ]  
    Val A:383 - Pro A:384   [ RasMol ]  
    Val B:383 - Pro B:384   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        EIF3B_YEAST | P06103: 3jap 3jaq 3ns5 3ns6 3zwl 4u1e

(-) Related Entries Specified in the PDB File

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