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(-) Description

Title :  STRUCTURE OF ADC-7 BETA-LACTAMASE IN COMPLEX WITH BORONIC ACID INHIBITOR S02030
 
Authors :  R. A. Powers, B. J. Wallar, H. C. Swanson
Date :  14 Jul 14  (Deposition) - 19 Nov 14  (Release) - 24 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.03
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  B  (1x)
Biol. Unit 2:  A  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Beta-Lactamase, Boronic Acid Inhibitor, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. A. Powers, H. C. Swanson, M. A. Taracila, N. W. Florek, C. Romagnoli, E. Caselli, F. Prati, R. A. Bonomo, B. J. Wallar
Biochemical And Structural Analysis Of Inhibitors Targeting The Adc-7 Cephalosporinase Of Acinetobacter Baumannii.
Biochemistry V. 53 7670 2014
PubMed-ID: 25380506  |  Reference-DOI: 10.1021/BI500887N

(-) Compounds

Molecule 1 - ADC-7 BETA-LACTAMASE
    Chains: B, A, C, D
    EC Number: 3.5.2.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 24-383
    Organism Scientific: ACINETOBACTER BAUMANNII
    Organism Taxid: 470

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x):  B  
Biological Unit 2 (1x): A   
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric Unit (2, 5)
No.NameCountTypeFull Name
1PO41Ligand/IonPHOSPHATE ION
2ZXM4Ligand/Ion1-{(2R)-2-(DIHYDROXYBORANYL)-2-[(THIOPHEN-2-YLACETYL)AMINO]ETHYL}-1H-1,2,3-TRIAZOLE-4-CARBOXYLIC ACID
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1PO4-1Ligand/IonPHOSPHATE ION
2ZXM1Ligand/Ion1-{(2R)-2-(DIHYDROXYBORANYL)-2-[(THIOPHEN-2-YLACETYL)AMINO]ETHYL}-1H-1,2,3-TRIAZOLE-4-CARBOXYLIC ACID
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1PO4-1Ligand/IonPHOSPHATE ION
2ZXM1Ligand/Ion1-{(2R)-2-(DIHYDROXYBORANYL)-2-[(THIOPHEN-2-YLACETYL)AMINO]ETHYL}-1H-1,2,3-TRIAZOLE-4-CARBOXYLIC ACID
Biological Unit 3 (2, 2)
No.NameCountTypeFull Name
1PO41Ligand/IonPHOSPHATE ION
2ZXM1Ligand/Ion1-{(2R)-2-(DIHYDROXYBORANYL)-2-[(THIOPHEN-2-YLACETYL)AMINO]ETHYL}-1H-1,2,3-TRIAZOLE-4-CARBOXYLIC ACID
Biological Unit 4 (1, 1)
No.NameCountTypeFull Name
1PO4-1Ligand/IonPHOSPHATE ION
2ZXM1Ligand/Ion1-{(2R)-2-(DIHYDROXYBORANYL)-2-[(THIOPHEN-2-YLACETYL)AMINO]ETHYL}-1H-1,2,3-TRIAZOLE-4-CARBOXYLIC ACID

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER B:64 , GLN B:120 , TYR B:150 , ASN B:152 , GLY B:314 , SER B:315 , THR B:316 , ARG B:340 , HOH B:582 , HOH B:653binding site for residue ZXM B 401
2AC2SOFTWARESER A:64 , GLN A:120 , TYR A:150 , ASN A:152 , TYR A:222 , GLY A:314 , SER A:315 , THR A:316 , SER A:317 , ARG A:340 , HOH A:569 , HOH A:571binding site for residue ZXM A 401
3AC3SOFTWARESER C:64 , GLN C:120 , TYR C:150 , ASN C:152 , GLY C:314 , SER C:315 , THR C:316 , SER C:317 , ARG C:340 , HOH C:628binding site for residue ZXM C 401
4AC4SOFTWARELYS C:38 , SER C:233 , HIS C:236 , TYR C:244binding site for residue PO4 C 402
5AC5SOFTWARESER D:64 , GLN D:120 , TYR D:150 , ASN D:152 , GLY D:314 , SER D:315 , THR D:316 , ARG D:340 , ASN D:343 , HOH D:604 , HOH D:605binding site for residue ZXM D 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4U0X)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Tyr B:276 -Pro B:277
2Tyr A:276 -Pro A:277
3Tyr C:276 -Pro C:277
4Tyr D:276 -Pro D:277

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4U0X)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4U0X)

(-) Exons   (0, 0)

(no "Exon" information available for 4U0X)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:355
                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhh..eeeeeeee..eeeeeeeeeee....ee......ee...hhhhhhhhhhhhhhhh.......hhhhhhhhhh.hhhhhhhhhhhhh...............hhhhhhhhhhh.........ee..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.........hhhhhhhh..ee.....ee......hhhhhhh.eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee..eee....eeee...hhhhhhhh.hhhhhhh.ee..........eeeeeeee....eeeeeeehhh.eeeeeee....hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4u0x A   4 KDQEIKKLVDQNFKPLLEKYDVPGMAVGVIQNNKKYEMYYGLQSVQDKKAVNSNTIFELGSVSKLFTATAGGYAKNKGKISFDDTPGKYWKELKNTPIDQVNLLQLATYTSGNLALQFPDEVQTDQQVLTFFKDWKPKNPIGEYRQYSNPSIGLFGKVVALSMNKPFDQVLEKTIFPALGLKHSYVNVPKTQMQNYAFGYNQENQPIRVNPGPLDAPAYGVKSTLPDMLSFIHANLNPQKYPTDIQRAINETHQGRYQVNTMYQALGWEEFSYPATLQTLLDSNSEQIVMKPNKVTAISKEPSVKMYHKTGSTSGFGTYVVFIPKENIGLVMLTNKRIPNEERIKAAYVVLNAIK 358
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353     


Chain B from PDB  Type:PROTEIN  Length:358
                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhh..eeeeeeee..eeeeeeeeeee....ee......ee.hhhhhhhhhhhhhhhhhh.......hhhhhhhhhh.hhhhhhhhhhhhh...............hhhhhhhhhhhh........ee..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.........hhhhhhhh..ee.....ee......hhhhhhh.eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eee..eee....eeee...hhhhhhhhhhhhhhhh.ee..........eeeeeeeee..eeeeeeeehhh.eeeeeee....hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4u0x B   1 NTPKDQEIKKLVDQNFKPLLEKYDVPGMAVGVIQNNKKYEMYYGLQSVQDKKAVNSNTIFELGSVSKLFTATAGGYAKNKGKISFDDTPGKYWKELKNTPIDQVNLLQLATYTSGNLALQFPDEVQTDQQVLTFFKDWKPKNPIGEYRQYSNPSIGLFGKVVALSMNKPFDQVLEKTIFPALGLKHSYVNVPKTQMQNYAFGYNQENQPIRVNPGPLDAPAYGVKSTLPDMLSFIHANLNPQKYPTDIQRAINETHQGRYQVNTMYQALGWEEFSYPATLQTLLDSNSEQIVMKPNKVTAISKEPSVKMYHKTGSTSGFGTYVVFIPKENIGLVMLTNKRIPNEERIKAAYVVLNAIK 358
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350        


Chain C from PDB  Type:PROTEIN  Length:356
                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhh..eeeeeeee..eeeeeeeeeee....ee......ee.hhhhhhhhhhhhhhhhh........hhhhhhhhhh.hhhhhhhhhhhhh...............hhhhhhhhhhh.........ee..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh........hhhhhhhh..ee.....ee......hhhhhhh.eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee..eee....eeee...hhhhhhhh.hhhhhh..ee..........eeeeeeeee..eeeeeeeehhh.eeeeeee....hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4u0x C   3 PKDQEIKKLVDQNFKPLLEKYDVPGMAVGVIQNNKKYEMYYGLQSVQDKKAVNSNTIFELGSVSKLFTATAGGYAKNKGKISFDDTPGKYWKELKNTPIDQVNLLQLATYTSGNLALQFPDEVQTDQQVLTFFKDWKPKNPIGEYRQYSNPSIGLFGKVVALSMNKPFDQVLEKTIFPALGLKHSYVNVPKTQMQNYAFGYNQENQPIRVNPGPLDAPAYGVKSTLPDMLSFIHANLNPQKYPTDIQRAINETHQGRYQVNTMYQALGWEEFSYPATLQTLLDSNSEQIVMKPNKVTAISKEPSVKMYHKTGSTSGFGTYVVFIPKENIGLVMLTNKRIPNEERIKAAYVVLNAIK 358
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352      


Chain D from PDB  Type:PROTEIN  Length:352
                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhh..eeeeeeee..eeeeeeeeeee....ee......ee...hhhhhhhhhhhhhhhh.......hhhhhhhhhh.hhhhhhhhhhhhh...............hhhhhhhhhhh.........ee..hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.........hhhhhhhh..ee.....ee......hhhhhhh.eehhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee..eeee...eeee...hhhhhhhh.hhhhhhh.ee........eeeeeeee....eeeeeee....eeeeeee....hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4u0x D   3 PKDQEIKKLVDQNFKPLLEKYDVPGMAVGVIQNNKKYEMYYGLQSVQDKKAVNSNTIFELGSVSKLFTATAGGYAKNKGKISFDDTPGKYWKELKNTPIDQVNLLQLATYTSGNLALQFPDEVQTDQQVLTFFKDWKPKNPIGEYRQYSNPSIGLFGKVVALSMNKPFDQVLEKTIFPALGLKHSYVNVPKTQMQNYAFGYNQENQPIRVNPGPLDAPAYGVKSTLPDMLSFIHANLNPQKYPTDIQRAINETHQGRYQVNTMYQALGWEEFSYPATLQTLLDSNSEQIVMKPNKVTAIEPSVKMYHKTGSTSGFGTYVVFIPKENIGLVMLTNKRIPNEERIKAAYVVLNA 356
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       304       314       324       334       344       354  
                                                                                                                                                                                                                                                                                                                                    301|                                                    
                                                                                                                                                                                                                                                                                                                                     304
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4U0X)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4U0X)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4U0X)

(-) Gene Ontology  (5, 5)

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        Q6DRA1_ACIBA | Q6DRA1: 4u0t

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4u0t APO STRUCTURE