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(-) Description

Title :  STRUCTURE OF C. ELEGANS HTP-2 BOUND TO HIM-3 CLOSURE MOTIF, P21 FORM
 
Authors :  S. C. Rosenberg, K. D. Corbett
Date :  10 Jul 14  (Deposition) - 19 Nov 14  (Release) - 17 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.54
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Keywords :  Horma Domain, Meiosis, Chromosome Axis, Peptide Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Kim, S. C. Rosenberg, C. L. Kugel, N. Kostow, O. Rog, V. Davydov, T. Y. Su, A. F. Dernburg, K. D. Corbett
The Chromosome Axis Controls Meiotic Events Through A Hierarchical Assembly Of Horma Domain Proteins.
Dev. Cell V. 31 487 2014
PubMed-ID: 25446517  |  Reference-DOI: 10.1016/J.DEVCEL.2014.09.013

(-) Compounds

Molecule 1 - PROTEIN HTP-2
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: ROSETTA 2 PLYSS
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 1-253
    Gene: HTP-2, CELE_Y73B6BL.2, Y73B6BL.2
    Organism Scientific: CAENORHABDITIS ELEGANS
    Organism Taxid: 6239
 
Molecule 2 - C. ELEGANS HIM-3 CLOSURE MOTIF
    Chains: C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: ROSETTA 2 PLYSS
    Expression System Taxid: 562
    Gene: HIM-3
    Organism Scientific: CAENORHABDITIS ELEGANS
    Organism Taxid: 6239

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A C 
Biological Unit 2 (1x):  B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4TZL)

(-) Sites  (0, 0)

(no "Site" information available for 4TZL)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4TZL)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Asp B:116 -Gly B:117
2Glu B:133 -Asn B:134
3Gln C:283 -Gly C:284

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4TZL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4TZL)

(-) Exons   (0, 0)

(no "Exon" information available for 4TZL)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:228
                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh...hhh.eeeee.....eeeee...hhhhhhhhhhhhhhhhhhhhh.eeeeeeeee.........eeeeeeeeeee....ee.....hhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh........eeeeeeee.............eee..........eeeeeeee....eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4tzl A  17 DAIDDKTWSKLFPSIVSDPDRSSNFMIRAIYVVFSAVLRQRNILEKEYFSKNYITENLSCMTLSFKNLRAHQIAQLLRAAGDATKDGFLKEISLVVTEHDGDVEAIEVFSMKFIYFENGGVVARLEDPHFAELAQLRYEGAESVRDQMVTIVRSVQFLCTKVLEPLPAEFTANFRLKYTNDAPSNFRIDGFDDSSTFYTLPDGIQSVTIGHLRPGHHAAHMQCWSKSM 251
                                    26        36        46        56        66        76        86        96       106       116       126       136    || 153       163       173       183       193       203       213       223       233       243        
                                                                                                                                                      141|                                                                                                      
                                                                                                                                                       149                                                                                                      


Chain B from PDB  Type:PROTEIN  Length:226
                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh...hhh.eeeee.....eeeee...hhhhhhhhhhhhhhhhhhhh..eeeeeeeee.........eeeeeeeee...........hhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.......eeeeeeeee.............eee..........eeeeeeee....eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tzl B  17 DAIDDKTWSKLFPSIVSDPDRSSNFMIRAIYVVFSAVLRQRNILEKEYFSKNYITENLSCMTLSFKNLRAHQIAQLLRAAGDATKDGFLKEISLVVTEHDGDVEAIEVFSMKFIYFENGGVVARLPHFAELAQLRYEGAESVRDQMVTIVRSVQFLCTKVLEPLPAEFTANFRLKYTNDAPSNFRIDGFDDSSTFYTLPDGIQSVTIGHLRPGHHAAHMQCWSKSM 251
                                    26        36        46        56        66        76        86        96       106       116       126       136    || 155       165       175       185       195       205       215       225       235       245      
                                                                                                                                                      141|                                                                                                    
                                                                                                                                                       151                                                                                                    


Chain C from PDB  Type:PROTEIN  Length:14
                                              
               SCOP domains -------------- SCOP domains
               CATH domains -------------- CATH domains
               Pfam domains -------------- Pfam domains
         Sec.struct. author ......eee..... Sec.struct. author
                 SAPs(SNPs) -------------- SAPs(SNPs)
                    PROSITE -------------- PROSITE
                 Transcript -------------- Transcript
                 4tzl C 273 NARDSPYGLSQGIT 286
                                   282    


Chain D from PDB  Type:PROTEIN  Length:16
                                                
               SCOP domains ---------------- SCOP domains
               CATH domains ---------------- CATH domains
               Pfam domains ---------------- Pfam domains
         Sec.struct. author .....eee...eee.. Sec.struct. author
                 SAPs(SNPs) ---------------- SAPs(SNPs)
                    PROSITE ---------------- PROSITE
                 Transcript ---------------- Transcript
                 4tzl D 274 ARDSPYGLSQGITKKN 289
                                   283
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4TZL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4TZL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4TZL)

(-) Gene Ontology  (6, 7)

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  Cis Peptide Bonds
    Asp B:116 - Gly B:117   [ RasMol ]  
    Gln C:283 - Gly C:284   [ RasMol ]  
    Glu B:133 - Asn B:134   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        G5EBG0_CAEEL | G5EBG0: 4trk 4tzj 4tzo 4tzs
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(-) Related Entries Specified in the PDB File

4trk 4tzj 4tzm 4tzn 4tzo 4tzq 4tzs