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(-) Description

Title :  CRYSTAL STRUCTURE OF CANAVALIA MARITIMA LECTIN (CONM) COMPLEXED WITH A DINUCLEOTIDE
 
Authors :  D. B. H. A. Vieira, P. Delatorre, J. C. Silva-Filho, R. B. Nobrega, B. S. C B. A. M. Rocha, E. M. Lima, C. S. Teixeira
Date :  09 Jul 14  (Deposition) - 22 Jul 15  (Release) - 14 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.25
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,C,D,E  (1x)
Biol. Unit 2:  B  (4x)
Biol. Unit 3:  F  (4x)
Keywords :  Carbohydrate Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. B. H. A. Vieira, P. Delatorre, B. S. Cavada, J. C. Silva-Filho, R. B. Nobrega, C. S. Teixeira, E. M. Lima, B. A. M. Rocha
Crystal Structure Of Canavalia Maritima Lectin (Conm) Complexed With A Dinucleotide
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CONCANAVALIN-A
    Chains: A, B, C, D, E, F
    Organism Common: BEACH BEAN
    Organism Scientific: CANAVALIA LINEATA
    Organism Taxid: 28957
    Synonym: CON A

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): A CDE 
Biological Unit 2 (4x):  B    
Biological Unit 3 (4x):      F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
13XZ1Ligand/IonBIS{[(2R,3S,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3-HYDROXYTETRAHYDROFURAN-2-YL]METHYL} HYDROGEN PHOSPHATE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
13XZ1Ligand/IonBIS{[(2R,3S,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3-HYDROXYTETRAHYDROFURAN-2-YL]METHYL} HYDROGEN PHOSPHATE
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
13XZ-1Ligand/IonBIS{[(2R,3S,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3-HYDROXYTETRAHYDROFURAN-2-YL]METHYL} HYDROGEN PHOSPHATE
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
13XZ-1Ligand/IonBIS{[(2R,3S,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3-HYDROXYTETRAHYDROFURAN-2-YL]METHYL} HYDROGEN PHOSPHATE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:112 , ALA A:125 , HIS A:127 , VAL A:129 , HIS D:127 , HIS E:127 , VAL E:129 , HOH E:711binding site for residue 3XZ E 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4TYS)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Ala A:207 -Asp A:208
2Ala B:207 -Asp B:208
3Ala C:207 -Asp C:208
4Ala D:207 -Asp D:208
5Ala E:207 -Asp E:208
6Ala F:207 -Asp F:208

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4TYS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4TYS)

(-) Exons   (0, 0)

(no "Exon" information available for 4TYS)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:232
                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee...............eeeeee......eeee.......eeeeeeeee....eeeeeee.....eeeeeee.hhhhh...eeeeeeeee........eeeeeeeeeeee..eeeeeee.........eeeee..ee.....ee..............eeeeee...ee.......eeeeeeeeeee..........eeeeeee..........hhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tys A   1 ADTIVAVELDTYPNTDIGDPSYPHIGIDIKSVRSKKTAKWNMQNGKVGTAHIIYNSVGKRLSAVVSYPNGDSATVSYDVDLDNVLPEWVRVGLSASTGLYKETNTILSWSFTSKLKSTNALHFVFNQFSKDQKDLILQGDATTGTDGNLELTRVSSNGSPQGSSVGRALFYAPVHIWESSAVVASFDATFTFLIKSSDSHPADGIAFFISNIDSSIPSGSTGRLLGLFPDAN 237
                                    10        20        30        40        50        60        70        80        90       100       110      |125       135       145       155       165       175       185       195       205       215       225       235  
                                                                                                                                              117|                                                                                                                  
                                                                                                                                               123                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:232
                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee...hhhhh.....eeeeee......eeee......eeeeeeeeee....eeeeeee.....eeeeeee.........eeeeeeeee........eeeeeeeeee.....eeeeee.........eeeee.........ee..............eeeeee...ee.........eeeeeeeeee.........eeeeeee..........hhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tys B   1 ADTIVAVELDTYPNTDIGDPSYPHIGIDIKSVRSKKTAKWNMQNGKVGTAHIIYNSVGKRLSAVVSYPNGDSATVSYDVDLDNVLPEWVRVGLSASTGLYKETNTILSWSFTSKLKSTNALHFVFNQFSKDQKDLILQGDATTGTDGNLELTRVSSNGSPQGSSVGRALFYAPVHIWESSAVVASFDATFTFLIKSSDSHPADGIAFFISNIDSSIPSGSTGRLLGLFPDAN 237
                                    10        20        30        40        50        60        70        80        90       100       110      |125       135       145       155       165       175       185       195       205       215       225       235  
                                                                                                                                              117|                                                                                                                  
                                                                                                                                               123                                                                                                                  


Chain C from PDB  Type:PROTEIN  Length:233
                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee.............eeeeee......eeee.......eeeeeeeee....eeeeeee.......eeeee.........eeeeeeeee........eeeeeeeeeeee...eeeeeee.........eeeee.........ee..............eeeeee...ee.......eeeeeeeeeee..........eeeeeeee..................... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tys C   1 ADTIVAVELDTYPNTDIGDPSYPHIGIDIKSVRSKKTAKWNMQNGKVGTAHIIYNSVGKRLSAVVSYPNGDSATVSYDVDLDNVLPEWVRVGLSASTGLYKETNTILSWSFTSKLKSETNALHFVFNQFSKDQKDLILQGDATTGTDGNLELTRVSSNGSPQGSSVGRALFYAPVHIWESSAVVASFDATFTFLIKSSDSHPADGIAFFISNIDSSIPSGSTGRLLGLFPDAN 237
                                    10        20        30        40        50        60        70        80        90       100       110      |124       134       144       154       164       174       184       194       204       214       224       234   
                                                                                                                                              117|                                                                                                                   
                                                                                                                                               122                                                                                                                   


Chain D from PDB  Type:PROTEIN  Length:232
                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee.............eeeeee......eeee.......eeeeeeeee....eeeeeee.....eeeeeee.hhhhh...eeeeeeeeee.......eeeeeeeeeeee..eeeeeee.........eeeee.........ee.............eeeeeee...ee.......eeeeeeeeeee..........eeeeeeee.........hhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tys D   1 ADTIVAVELDTYPNTDIGDPSYPHIGIDIKSVRSKKTAKWNMQNGKVGTAHIIYNSVGKRLSAVVSYPNGDSATVSYDVDLDNVLPEWVRVGLSASTGLYKETNTILSWSFTSKLKSTNALHFVFNQFSKDQKDLILQGDATTGTDGNLELTRVSSNGSPQGSSVGRALFYAPVHIWESSAVVASFDATFTFLIKSSDSHPADGIAFFISNIDSSIPSGSTGRLLGLFPDAN 237
                                    10        20        30        40        50        60        70        80        90       100       110      |125       135       145       155       165       175       185       195       205       215       225       235  
                                                                                                                                              117|                                                                                                                  
                                                                                                                                               123                                                                                                                  


Chain E from PDB  Type:PROTEIN  Length:232
                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee.............eeeeee......eeee.......eeeeeeeee....eeeeeee.......eeeee.hhhhh...eeeeeeeee........eeeeeeeeeeee..eeeeeee.........eeeee.........ee..............eeeeee...ee.......eeeeeeeeeee..........eeeeeee..........hhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tys E   1 ADTIVAVELDTYPNTDIGDPSYPHIGIDIKSVRSKKTAKWNMQNGKVGTAHIIYNSVGKRLSAVVSYPNGDSATVSYDVDLDNVLPEWVRVGLSASTGLYKETNTILSWSFTSKLKSTNALHFVFNQFSKDQKDLILQGDATTGTDGNLELTRVSSNGSPQGSSVGRALFYAPVHIWESSAVVASFDATFTFLIKSSDSHPADGIAFFISNIDSSIPSGSTGRLLGLFPDAN 237
                                    10        20        30        40        50        60        70        80        90       100       110      |125       135       145       155       165       175       185       195       205       215       225       235  
                                                                                                                                              117|                                                                                                                  
                                                                                                                                               123                                                                                                                  


Chain F from PDB  Type:PROTEIN  Length:232
                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee.............eeeeee.......eee......eeeeeeeee.....eeeeeee.......eeeee.hhhhh...eeeeeeeee........eeeeeeeeee.....eeeeee.........eeeee.........ee..............eeeeee...ee.........eeeeeeeeee.........eeeeeeee.........hhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tys F   1 ADTIVAVELDTYPNTDIGDPSYPHIGIDIKSVRSKKTAKWNMQNGKVGTAHIIYNSVGKRLSAVVSYPNGDSATVSYDVDLDNVLPEWVRVGLSASTGLYKETNTILSWSFTSKLKSTNALHFVFNQFSKDQKDLILQGDATTGTDGNLELTRVSSNGSPQGSSVGRALFYAPVHIWESSAVVASFDATFTFLIKSSDSHPADGIAFFISNIDSSIPSGSTGRLLGLFPDAN 237
                                    10        20        30        40        50        60        70        80        90       100       110      |125       135       145       155       165       175       185       195       205       215       225       235  
                                                                                                                                              117|                                                                                                                  
                                                                                                                                               123
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4TYS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4TYS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4TYS)

(-) Gene Ontology  (4, 4)

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    Ala D:207 - Asp D:208   [ RasMol ]  
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        CONA_CANLI | P81460: 2cwm 2cy6 2cyf 3snm 4dpn 4i30 4tzd 5byn

(-) Related Entries Specified in the PDB File

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