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(-) Description

Title :  TERNARY COMPLEX OF P38 AND MK2 WITH A P38 INHIBITOR
 
Authors :  J. G. Cumming, J. E. Debreczeni, F. Edfeldt, F. Evertsson, M. Harrison, G. Holdgate, M. James, S. Lamont, K. Oldham, J. E. Sullivan, S. Wells
Date :  08 Jul 14  (Deposition) - 22 Jul 15  (Release) - 22 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  P38, Mk2, P38 Inhibitor, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. G. Cumming
Discovery Of Substrate Selective, Atp-Competitive P38 Alpha Map Kinase Inhibitors
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MAP KINASE-ACTIVATED PROTEIN KINASE 2
    Chains: A
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 51-400
    Gene: MAPKAPK2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: MK2
 
Molecule 2 - MITOGEN-ACTIVATED PROTEIN KINASE 14
    Chains: B
    EC Number: 2.7.11.24
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 6-353
    Gene: MAPK14, CRK1, CSBP1, CSBP2
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: MAPK 14,CRK1,MITOGEN-ACTIVATED PROTEIN KINASE P38 ALPHA,MAP KINASE P38 ALPHA

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
139G1Ligand/IonN-[5-(DIMETHYLSULFAMOYL)-2-METHYLPHENYL]-1-PHENYL-5-PROPYL-1H-PYRAZOLE-4-CARBOXAMIDE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:369 , ALA B:51 , LYS B:53 , GLU B:71 , LEU B:75 , THR B:106 , HIS B:107 , MET B:109 , GLY B:110 , LEU B:167 , ASP B:168binding site for residue 39G B 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4TYH)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:154 -Asp A:155
2Asn A:288 -Pro A:289

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4TYH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4TYH)

(-) Exons   (0, 0)

(no "Exon" information available for 4TYH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:339
                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhh.eeeeeeeeee....eeeeeee.....eeeeeeee.hhhhhhhhhhhhhhh.......eeeeeeeee..eeeeeeee......hhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee........eee......ee......................hhhhhhhhhhhhhhhhhhhhhhhh....ee..................hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhh.hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tyh A  51 GLQIKKNAIIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQSTKVPQTPLHTSRVLKEDKERWEDVKEEMTSALATMRVDYEQIKIKKIEDASNPLLLKRRKKARALEAAALAH 400
                                    60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       281       291       301       311       321       331       341       351       361       371       381       391         
                                                                                                                                                                                                                                                   268|                                                                                                                        
                                                                                                                                                                                                                                                    280                                                                                                                        


Chain B from PDB  Type:PROTEIN  Length:335
                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..eeeeee..eeeeeee......eeeeeee.....eeeeee......hhhhhhhhhhhhhhhhhh.........eee............eeeee...eehhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee.......ee......hhhhh...hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh..hhhhhh...hhhhhhhhhhh......hhhhhh...hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhh...hhhhh...............hhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tyh B   6 PTFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLAGYVATRWYRAPEIMYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLAQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKSLTYDEVISFVPPPL 353
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165      |183       193||     208       218       228       238       248       258       268       278       288       298       308       318       328       338       348     
                                                                                                                                                                                                172|          194|                                                                                                                                                         
                                                                                                                                                                                                 181           200
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4TYH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4TYH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4TYH)

(-) Gene Ontology  (98, 120)

Asymmetric/Biological Unit(hide GO term definitions)

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  4tyh
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  MAPK2_HUMAN | P49137
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  MK14_MOUSE | P47811
    Comparative Protein Structure Models: ModBase
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  2.7.11.1
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  2.7.11.24
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MAPK2_HUMAN | P49137: 1kwp 1nxk 1ny3 2jbo 2jbp 2okr 2onl 2oza 2p3g 2pzy 3a2c 3fpm 3fyj 3fyk 3gok 3ka0 3kc3 3kga 3m2w 3m42 3r2b 3r2y 3r30 3wi6
        MK14_MOUSE | P47811: 1lew 1lez 1yw2 1ywr 2ewa 2ghl 2ghm 2gtm 2gtn 2oza 2puu 3p4k 3p5k 3p78 3p79 3p7a 3p7b 3p7c 3py3 3tg1 4ka3 4loo 4lop 4loq 5lar 5uoj

(-) Related Entries Specified in the PDB File

4tyk