4TY0 - JenaLib

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Title :   CRYSTAL STRUCTURE OF VIBRIO CHOLERAE DNCV CYCLIC AMP-GMP SYNTHASE IN COMPLEX WITH LINEAR INTERMEDIATE 5' PPPA(3',5')PG

Authors :   P. J. Kranzusch, A. S. Y. Lee, S. C. Wilson, M. S. Solovykh, R. E. Vance, J. J. A. Doudna

Date :   07 Jul 14 (Deposition) - 13 Aug 14 (Release) - 01 Oct 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Nucleotidyl Transferase, Cyclic Nucleotide Synthase, Cgas, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. J. Kranzusch, A. S. Lee, S. C. Wilson, M. S. Solovykh, R. E. Vance, J. M. Berger, J. A. Doudna
Structure-Guided Reprogramming Of Human Cgas Dinucleotide Linkage Specificity.
Cell V. 158 1011 2014
PubMed-ID: 25131990 | Reference-DOI: 10.1016/J.CELL.2014.07.028

Molecule 1 - CYCLIC AMP-GMP SYNTHASE
	Chains	:	A, B
	EC Number	:	2.7.7.86
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	DNCV, VC_0179
	Organism Scientific	:	VIBRIO CHOLERAE O1 BIOVAR EL TOR STR. N16961
	Organism Taxid	:	243277
	Strain	:	ATCC 39315 / EL TOR INABA N16961
	Synonym	:	C-AMP-GMP SYNTHASE,DINUCLEOTIDE CYCLASE DNCV

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 9)

No.	Name	Count	Type	Full Name
1	38V	2	Ligand/Ion	[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3-[[(2R,3S,4R,5R)-5-(2-AZANYL-6-OXIDANYLIDENE-3H-PURIN-9-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL]OXY-4-OXIDANYL-OXOLAN-2-YL]METHOXY-[[OXIDANYL(PHOSPHONOOXY)PHOSPHORYL]METHYL]PHOSPHINICACID
2	ACT	3	Ligand/Ion	ACETATE ION
3	MG	4	Ligand/Ion	MAGNESIUM ION

Biological Unit 1 (2, 4)

No.	Name	Count	Type	Full Name
1	38V	1	Ligand/Ion	[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3-[[(2R,3S,4R,5R)-5-(2-AZANYL-6-OXIDANYLIDENE-3H-PURIN-9-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL]OXY-4-OXIDANYL-OXOLAN-2-YL]METHOXY-[[OXIDANYL(PHOSPHONOOXY)PHOSPHORYL]METHYL]PHOSPHINICACID
2	ACT	3	Ligand/Ion	ACETATE ION
3	MG	-1	Ligand/Ion	MAGNESIUM ION

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	38V	1	Ligand/Ion	[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3-[[(2R,3S,4R,5R)-5-(2-AZANYL-6-OXIDANYLIDENE-3H-PURIN-9-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL]OXY-4-OXIDANYL-OXOLAN-2-YL]METHOXY-[[OXIDANYL(PHOSPHONOOXY)PHOSPHORYL]METHYL]PHOSPHINICACID
2	ACT	-1	Ligand/Ion	ACETATE ION
3	MG	-1	Ligand/Ion	MAGNESIUM ION

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:132 , ASP A:134 , ASP A:194 , 38V A:503 , HOH A:678 , HOH A:679	binding site for residue MG A 501
2	AC2	SOFTWARE	ASP A:132 , ASP A:134 , 38V A:503 , HOH A:680	binding site for residue MG A 502
3	AC3	SOFTWARE	GLN A:113 , GLY A:114 , SER A:115 , TYR A:118 , ASP A:132 , ASP A:134 , LYS A:178 , THR A:180 , CYS A:181 , ASP A:194 , TYR A:198 , SER A:260 , PRO A:262 , LYS A:288 , SER A:302 , LEU A:353 , MG A:501 , MG A:502 , HOH A:679 , HOH A:680 , HOH A:681 , HOH A:697 , HOH A:718 , HOH A:730 , HOH A:731 , HOH A:766 , HOH A:767 , HOH A:768 , HOH A:773 , HOH A:778 , HOH A:794 , HOH A:807 , HOH A:855	binding site for residue 38V A 503
4	AC4	SOFTWARE	TRP A:111 , TYR A:138 , PHE A:205 , LYS A:263	binding site for residue ACT A 504
5	AC5	SOFTWARE	PHE A:125	binding site for residue ACT A 505
6	AC6	SOFTWARE	GLU A:343	binding site for residue ACT A 506
7	AC7	SOFTWARE	ASP B:132 , ASP B:134 , ASP B:194 , MG B:502 , 38V B:503 , HOH B:681 , HOH B:682	binding site for residue MG B 501
8	AC8	SOFTWARE	ASP B:132 , ASP B:134 , MG B:501 , 38V B:503 , HOH B:683	binding site for residue MG B 502
9	AC9	SOFTWARE	GLN B:113 , GLY B:114 , SER B:115 , TYR B:118 , ASP B:132 , ASP B:134 , LYS B:178 , THR B:180 , CYS B:181 , ASP B:194 , PRO B:196 , TYR B:198 , SER B:260 , PRO B:262 , LYS B:288 , SER B:302 , LEU B:353 , MG B:501 , MG B:502 , HOH B:682 , HOH B:683 , HOH B:695 , HOH B:698 , HOH B:716 , HOH B:754 , HOH B:758 , HOH B:767 , HOH B:770 , HOH B:771 , HOH B:772 , HOH B:775 , HOH B:778 , HOH B:790 , HOH B:794 , HOH B:833 , HOH B:841	binding site for residue 38V B 503

(no "SS Bond" information available for 4TY0)

(no "Cis Peptide Bond" information available for 4TY0)

(no "SAP(SNP)/Variant" information available for 4TY0)

(no "PROSITE Motif" information available for 4TY0)

(no "Exon" information available for 4TY0)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:384
                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eehhhhhhh...hhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeehhhhh............eeeeeeeeeee...hhhhhhhhhhhhhhhhhh....eeeee....eeeee....eeeee.eeeeehhhhhhhhhhhhhh.....hhhh.eee.......eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh....hhhhhee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ty0 A   3 SMTWNFHQYYTNRNDGLMGKLVLTDEEKNNLKALRKIIRLRTRDVFEEAKGIAKAVKKSALTFEIIQEKVSTTQIKHLSDSEQREVAKLIYEMDDDARDEFLGLTPRFWTQGSFQYDTLNRPFQPGQEMDIDDGTYMPMPIIGHSLLILLVDASLKSLVAENHGWKFEAKQTCGRIKIEAEKTHIDVPMYAIPKDEFQKKQIALEANRSYELDSENVNLALREGDRKWINSDPKIVEDWFNDSCIRIGKHLRKVCRFMKAWRDAQWDVGGPSSISLMAATVNILDSVAHDASDLGETMKIIAKHLPSEFARGVESPDSTDEKPLFPPSYKHGPREMDIMSKLERLPEILSSAESADSKSEALKKINMAFGNRVTNSELIVLAKA 413
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142||     158       168       178       188       198       208       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409    
                                                                                                                                                                      143|                                                                217|                                                                                                                                                                              
                                                                                                                                                                       150                                                                 239

Chain B from PDB  Type:PROTEIN  Length:362
                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eehhhhhhh...hhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeehhhhh............eeeeeeeeeee..hhhhhhhhhhhhhhhhh....eeeee....eeeee....eeeee.eeeee........eee.......eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh....hhhhhee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ty0 B   5 TWNFHQYYTNRNDGLMGKLVLTDEEKNNLKALRKIIRLRTRDVFEEAKGIAKAVKKSALTFEIIQEKVSTTQIKHLSDSEQREVAKLIYEMDDDARDEFLGLTPRFWTQGSFQYDTLNRPFQPGQEMDIDDGTYMPMPGHSLLILLVDASLKSLVAENHGWKFEAKQTCGRIKIEAEKTHIDVPMYAIPKDEFSENVNLALREGDRKWINSDPKIVEDWFNDSCIRIGKHLRKVCRFMKAWRDAQWDVGGPSSISLMAATVNILDSVAHDASDLGETMKIIAKHLPSEFARGVESPDSTDEKPLFPPSYKHGPREMDIMSKLERLPEILSSAESADSKSEALKKINMAFGNRVTNSELIVLA 411
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       152       162       172       182       192       202  ||   249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409  
                                                                                                                                                                   142|                                                   205|                                                                                                                                                                        
                                                                                                                                                                    151                                                    243

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4TY0)

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	DNCV_VIBCH \| Q9KVG7	:	4txy 4txz 4u03 4u0l 4u0m 4u0n 4xj1 4xj3 4xj4 4xj5 5go3

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Ligands, Modified Residues, Ions (3, 9)

Sites (9, 9)

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