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(-) Description

Title :  CRYSTAL STRUCTURE OF YEAST SAC1/VPS74 COMPLEX
 
Authors :  Y. Cai, F. A. Horenkamp, K. R. Reinisch
Date :  23 Jun 14  (Deposition) - 27 Aug 14  (Release) - 01 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.19
Chains :  Asym./Biol. Unit :  A,X
Keywords :  Protein Complex, Phosphoric Monoester Hydrolases, Phosphatidylinositol Phosphates, Golgi Apparatus (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Cai, Y. Deng, F. Horenkamp, K. M. Reinisch, C. G. Burd
Sac1-Vps74 Structure Reveals A Mechanism To Terminate Phosphoinositide Signaling In The Golgi Apparatus.
J. Cell Biol. V. 206 485 2014
PubMed-ID: 25113029  |  Reference-DOI: 10.1083/JCB.201404041

(-) Compounds

Molecule 1 - PHOSPHOINOSITIDE PHOSPHATASE SAC1
    Chains: X
    EC Number: 3.1.3.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Gene: SAC1, RSD1, YKL212W
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: RECESSIVE SUPPRESSOR OF SECRETORY DEFECT
 
Molecule 2 - VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 74
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Gene: VPS74, YDR372C, D9481.15
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AX

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4TU3)

(-) Sites  (0, 0)

(no "Site" information available for 4TU3)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4TU3)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Tyr A:294 -Pro A:295

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4TU3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4TU3)

(-) Exons   (0, 0)

(no "Exon" information available for 4TU3)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:258
                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh..ee....hhhhh.hhhhh..ee.......hhhhhhhhhhhhh....hhhhhhhhhhh......hhhhh..hhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhh....hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4tu3 A  64 IPTLTLMEEVLLMGLRWNDSISYALRGCIIIELALRGKIRILDDSARKRFDLSERLIEVIDSSKTGEVLLDETLQLMKNDEPLSISNWIDLLSGETWNLLKINYQLKQVRERLAKGLVDKGVLRTEPIADASCKEAIKRRVLSVLVSRNMELSYNEYFPETTSFKIIRTLALICGSYGANVLENVLTTLEYEKRDKAISRAEEIMAQFSQYPFDLEKETELGVSVNLNKEVKEEIENNPGHDLQLEVIAGVFEVFSRM 341
                                    73     || 91       101       111       121       131       141       151       161       171       181       191     ||213       223       233       243       253       263       273       283       293       303       313       323       333        
                                          79|                                                                                                          197|                                                                                                                                   
                                           88                                                                                                           210                                                                                                                                   


Chain X from PDB  Type:PROTEIN  Length:400
                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...eeeeee.....eeeee.....eeee..........eeee.eeeeeeee..eeeeeeeeeeeeeeee..eeeeeeeeeeee........hhhhhhhhhhhhhhhh...eee........hhhhhhh....................hhhhhhhhh.hhhhh......eeeeeeeeeee....eeeeeeeeee...............eeeeeeeeeee....eeeeeeeeeee.......hhhhhhhhhhhhhhhh.eeeeeee......eeeeee.....hhhhhhhhhhhhhhhhhhhh......eeeee.....eeeeee...eeeeee....hhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tu3 X   2 TGPIVYVQNADGIFFKLAENDAVIHLANQDQGVRVLGAEEFPVQGEVVKIASLMGFIKLKLNRYAIIANTVEETGRFNGHVFYRVLQHSIVSTKFNSRIDSEEAEYIKLLELHLKNSTFYFSYTYDLTNSLQRNEKVGPAASWKTADERFFWNHYLTEDLRNFAHQDPRIDSFIQPVIYGYAKTVDAVLNATPIVLGLITRRSIFRGVDKDGNVGNFNETEQILLAENPESEKIHVFSFLQTRGSVPIENSLDATKKHFDQQKELYGDNYLVNLVLNDPKIHYVYFDFHHECRKMQWHRVKLLIDHLEKLGLSNEDFFHKVIDSNGNTVEIVNEQHSVVRTNCMDCLDRTNVVQSVLAQWVLQKEFESADVVATGSTWEDNAPLLTSYQNLWADNADAVS 449
                                    11        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205     ||223       233       243       253       280       290       300    || 329       339       349       359       369       379       389       399       409       419       429       439       449
                                             20|                                                                                                                                                                                       211|                                      261|                       305|                                                                                                                            
                                              25                                                                                                                                                                                        220                                       279                        325
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4TU3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4TU3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4TU3)

(-) Gene Ontology  (34, 36)

Asymmetric/Biological Unit(hide GO term definitions)

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  Sites
(no "Sites" information available for 4tu3)
 
  Cis Peptide Bonds
    Tyr A:294 - Pro A:295   [ RasMol ]  
 

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  VPS74_YEAST | Q06385
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SAC1_YEAST | P32368: 3lwt
        VPS74_YEAST | Q06385: 2zih 2zii

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4TU3)