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(-) Description

Title :  DEINOCOCCUS RADIODURANS DNA POLYMERASE III SUBUNIT BETA
 
Authors :  L. Niiranen, K. Lian, K. A. Johnson, E. Moe
Date :  17 Jun 14  (Deposition) - 29 Apr 15  (Release) - 29 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Dna Clamp, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Niiranen, K. Lian, K. A. Johnson, E. Moe
Crystal Structure Of The Dna Polymerase Iii Beta Subunit ( Beta-Clamp) From The Extremophile Deinococcus Radiodurans.
Bmc Struct. Biol. V. 15 5 2015
PubMed-ID: 25886944  |  Reference-DOI: 10.1186/S12900-015-0032-6

(-) Compounds

Molecule 1 - DNA POLYMERASE III SUBUNIT BETA
    Chains: A, B
    EC Number: 2.7.7.7
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PDEST14
    Expression System Strain: STAR PLYSS PRARE
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: DR_0001
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 243230
    Other Details: THE LAST SEVEN RESIDUES ARE NOT VISIBLE IN THE ELECTRON DENSITY. THE LAST SIX RESIDUES ARE CLONING ARTEFACTS. THE UNIPROT ENTRY Q9RYE8 SEQUENCE IS INCORRECT DUE TO AN ANNOTATION MISTAKE IN THE GENOMIC SEQUENCE LEADING TO A FRAMESHIFT. THIS IS CORRECTED IN OUR SEQUENCE GIVING A PROTEIN OF 362 AA.
    Strain: ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

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(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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Chain A from PDB  Type:PROTEIN  Length:361
                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeehhhhhhhhhhhhhhh..........eeeeee...eeeeeee...eeeeeeee.eee....eeeehhhhhhhhhhh...eeeeeee..eeeeee..eeeeee..hhhhh..........eeeehhhhhhhhhhhhhhh.....hhhh.eeeeeee..eeeeeee....eeeeeee.......eeeehhhhhhhhhhh...eeeeee...eeeee...eeeeee.......hhhhhh.....eeeeeehhhhhhhhhhhhh........eeeeeee..eeeeeee...eeeeeeee.eeee...eeeeeeehhhhhhhhh....eeeeee......eeeee.hhhh.eeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4trt A   1 VMKANVTKKTLNEGLGLLERVIPSRSSNPLLTALKVETSEGGLTLSGTNLEIDLSCFVPAEVQQPENFVVPAHLFAQIVRNLGGELVELELSGQELSVRSGGSDFKLQTGDIEAYPPLSFPAQADVSLDGGELSRAFSSVRYAASNEAFQAVFRGIKLEHHGESARVVASDGYRVAIRDFPASGDGKNLIIPARSVDELIRVLKDGEARFTYGDGMLTVTTDRVKMNLKLLDGDFPDYERVIPKDIKLQVTLPATALKEAVNRVAVLADKNANNRVEFLVSEGTLRLAAEGDYGRAQDTLSVTQGGTEQAMSLAFNARHVLDALGPIDGDAELLFSGSTSPAIFRAVGGGGGYMAVMVTLR 361
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360 


Chain B from PDB  Type:PROTEIN  Length:361
                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeehhhhhhhhhhhhhhh..........eeeeeee..eeeeeee...eeeeeeee.eee....eeeehhhhhhhhhhh...eeeeeee..eeeeee..eeeeee..hhhhh..........eeeehhhhhhhhhhhhhhh.....hhhh.eeeeeee..eeeeeee....eeeeeee.......eeeehhhhhhhhhhh...eeeeee...eeeee...eeeeee.......hhhhhh.....eeeeeehhhhhhhhhhhhh........eeeeeee..eeeeeee...eeeeeeee.eeee...eeeeeeehhhhhhhhh....eeeeee......eeeee.hhhh.eeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4trt B   1 VMKANVTKKTLNEGLGLLERVIPSRSSNPLLTALKVETSEGGLTLSGTNLEIDLSCFVPAEVQQPENFVVPAHLFAQIVRNLGGELVELELSGQELSVRSGGSDFKLQTGDIEAYPPLSFPAQADVSLDGGELSRAFSSVRYAASNEAFQAVFRGIKLEHHGESARVVASDGYRVAIRDFPASGDGKNLIIPARSVDELIRVLKDGEARFTYGDGMLTVTTDRVKMNLKLLDGDFPDYERVIPKDIKLQVTLPATALKEAVNRVAVLADKNANNRVEFLVSEGTLRLAAEGDYGRAQDTLSVTQGGTEQAMSLAFNARHVLDALGPIDGDAELLFSGSTSPAIFRAVGGGGGYMAVMVTLR 361
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

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