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(-) Description

Title :  SPORULATION INHIBITOR OF DNA REPLICATION, SIRA, IN COMPLEX WITH DOMAIN I OF DNAA
 
Authors :  K. H. Jameson, J. P. Turkenburg, M. J. Fogg, A. Grahl, A. J. Wilkinson
Date :  09 Jun 14  (Deposition) - 30 Jul 14  (Release) - 10 Sep 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Replication, Sporulation, Inhibitory Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. H. Jameson, N. Rostami, M. J. Fogg, J. P. Turkenburg, A. Grahl, H. Murray, A. J. Wilkinson
Structure And Interactions Of The Bacillus Subtilis Sporulation Inhibitor Of Dna Replication, Sira, With Domain I Of Dnaa.
Mol. Microbiol. V. 93 975 2014
PubMed-ID: 25041308  |  Reference-DOI: 10.1111/MMI.12713

(-) Compounds

Molecule 1 - SPORULATION INHIBITOR OF REPLICATION PROTEIN SIRA
    Chains: A, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-YSBLIC
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Gene: SIRA, YNEE, YOXF, BSU17900
    Organism Scientific: BACILLUS SUBTILIS
    Organism Taxid: 224308
    Strain: 168
    Synonym: SIRA
 
Molecule 2 - CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA
    Chains: B, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-YSBLIC
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Gene: DNAA, DNAH, BSU00010
    Organism Scientific: BACILLUS SUBTILIS
    Organism Taxid: 224308
    Strain: 168
    Synonym: DOMAIN I OF DNAA

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric Unit (2, 3)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2BME2Ligand/IonBETA-MERCAPTOETHANOL
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2BME1Ligand/IonBETA-MERCAPTOETHANOL
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1ACT-1Ligand/IonACETATE ION
2BME1Ligand/IonBETA-MERCAPTOETHANOL

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:15 , PRO A:124 , CYS A:125 , HOH A:400binding site for residue BME A 201
2AC2SOFTWAREHIS A:4 , ASN A:132 , HOH A:303 , HOH A:312binding site for residue ACT A 202
3AC3SOFTWAREARG A:64 , MET A:67 , ALA C:15 , PHE C:19 , PRO C:124 , CYS C:125 , ASN C:140 , HOH C:302binding site for residue BME C 201

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:125 -A:201
2C:125 -C:201

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4TPS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 4TPS)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:140
                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeehhhhhhhh..hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhee..hhhhhhhhhhhhhh..eeeee..eeeee.hhh.eeeeeeee..eeeeeeee.hhhhhhhhhhhhhhh..eeeee....eeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tps A   2 ERHYYTYLIKEEFANHYFGRESVMFELFQDYHWTSLEKQQYEMTEKQIQYITQPIPILHMHQRLKMNLNKTDYRQLDYIYRIALPKAKGHATFMMKEHMIEIVASGDYEAETIFFEVLRKVSPCFLAMDFNSKRYGWLNP 141
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141


Chain B from PDB  Type:PROTEIN  Length:82
                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh..hhhhhhhhh...eeeeee..eeeee..hhhhhhhhhhhhhhhhhhhhhhhhh...eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------- Transcript
                 4tps B   0 AMENILDLWNQALAQIEKKLSKPSFETWMKSTKAHSLQGDTLTITAPNEFARDWLESRYLHLIADTIYELTGEELSIKFVIP  81
                                     9        19        29        39        49        59        69        79  


Chain C from PDB  Type:PROTEIN  Length:140
                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeehhhhhhhhh..hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhee..hhhhhhhhhhhhh...eeeee..eeeee.hhh.eeeeeee....eeeeeee.hhhhhhhhhhhhhhh..eeee......eee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tps C   2 ERHYYTYLIKEEFANHYFGRESVMFELFQDYHWTSLEKQQYEMTEKQIQYITQPIPILHMHQRLKMNLNKTDYRQLDYIYRIALPKAKGHATFMMKEHMIEIVASGDYEAETIFFEVLRKVSPCFLAMDFNSKRYGWLNP 141
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141


Chain D from PDB  Type:PROTEIN  Length:84
                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh..hhhhhhhhh...eeeeee..eeeee..hhhhhhhhhhhhhhhhhhhhhhhhh...eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------ Transcript
                 4tps D  -2 GPAMENILDLWNQALAQIEKKLSKPSFETWMKSTKAHSLQGDTLTITAPNEFARDWLESRYLHLIADTIYELTGEELSIKFVIP  81
                                     7        17        27        37        47        57        67        77
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4TPS)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (12, 12)

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