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(-) Description

Title :  FURTHER REFINEMENT OF THE STRUCTURE OF YEAST T-RNA-PHE
 
Authors :  B. E. Hingerty, R. S. Brown, A. Jack
Date :  12 Apr 78  (Deposition) - 12 Apr 78  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A
Keywords :  T-Rna, Single Strand, Loops (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  B. Hingerty, R. S. Brown, A. Jack
Further Refinement Of The Structure Of Yeast Trnaphe.
J. Mol. Biol. V. 124 523 1978
PubMed-ID: 361973  |  Reference-DOI: 10.1016/0022-2836(78)90185-7
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TRNAPHE
    ChainsA
    Organism CommonBAKER'S YEAST
    Organism ScientificSACCHAROMYCES CEREVISIAE
    Organism Taxid4932

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (12, 18)

Asymmetric/Biological Unit (12, 18)
No.NameCountTypeFull Name
11MA1Mod. Nucleotide6-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE
22MG1Mod. Nucleotide2N-METHYLGUANOSINE-5'-MONOPHOSPHATE
35MC2Mod. Nucleotide5-METHYLCYTIDINE-5'-MONOPHOSPHATE
45MU1Mod. Nucleotide5-METHYLURIDINE 5'-MONOPHOSPHATE
57MG1Mod. Nucleotide7N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHATE
6H2U2Mod. Nucleotide5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
7M2G1Mod. NucleotideN2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE
8MG4Ligand/IonMAGNESIUM ION
9OMC1Mod. NucleotideO2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
10OMG1Mod. NucleotideO2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
11PSU2Mod. NucleotidePSEUDOURIDINE-5'-MONOPHOSPHATE
12YG1Mod. ResidueWYBUTOSINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREG A:20 , A A:21BINDING SITE FOR RESIDUE MG A 78
2AC2SOFTWAREG A:19BINDING SITE FOR RESIDUE MG A 79

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4TNA)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:RNA  Length:76
                                                                                                           
                  4tna A  1 GCGGAUUUAgCUCAGuuGGGAGAGCgCCAGAcUgAAgAucUGGAGgUCcUGUGuuCGaUCCACAGAAUUCGCACCA 76
                                    10     || 20     |  30 | |  | 40     |  50   ||  |60        70      
                                    10-2MG ||       26-M2G | |  | ||     |  |    55-PSU                 
                                          16-H2U          32-OMC| ||     |  |    |  58-1MA              
                                           17-H2U           34-OMG||     |  |    |                      
                                                               37-YG     |  |    |                      
                                                                 39-PSU  |  |    |                      
                                                                  40-5MC |  |    |                      
                                                                        46-7MG   |                      
                                                                           49-5MC|                      
                                                                                54-5MU                  

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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4TNA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4TNA)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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