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(-) Description

Title :  CRYSTAL STRUCTURE OF 6-PHOSPHOGLUCONOLACTONASE FROM MYCOBACTERIUM SMEGMATIS N131D MUTANT SOAKED WITH CUSO4
 
Authors :  N. Fujieda, E. Stuttfeld, T. Maier
Date :  31 May 14  (Deposition) - 03 Jun 15  (Release) - 03 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.39
Chains :  Asym./Biol. Unit :  A
Keywords :  Rossmann Fold, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Fujieda, J. Schatti, E. Stuttfeld, K. Ohkubo, T. Maier, S. Fukuzumi T. R. Ward
Enzyme Repurposing Of A Hydrolase As An Emergent Peroxidase Upon Metal Binding
Chem Sci 2015
PubMed: search  |  Reference-DOI: 10.1039/C5SC01065A

(-) Compounds

Molecule 1 - 6-PHOSPHOGLUCONOLACTONASE
    Chains: A
    EC Number: 3.1.1.31
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET26
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PGL, MSMEG_3099, MSMEI_3021
    Mutation: YES
    Organism Scientific: MYCOBACTERIUM SMEGMATIS
    Organism Taxid: 246196
    Strain: ATCC 700084 / MC(2)155
    Synonym: 6-PHOSPHOGLUCONOLACTONASE DEVB

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 22)

Asymmetric/Biological Unit (5, 22)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
3CU15Ligand/IonCOPPER (II) ION
2CU11Ligand/IonCOPPER (I) ION
4EDO3Ligand/Ion1,2-ETHANEDIOL
5SO41Ligand/IonSULFATE ION

(-) Sites  (22, 22)

Asymmetric Unit (22, 22)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLN A:36 , HIS A:67 , TYR A:69 , ASP A:131 , SER A:134 , SER A:135binding site for residue EDO A 301
02AC2SOFTWAREGLU A:112 , GLY A:123 , CU A:313 , HOH A:461binding site for residue EDO A 302
03AC3SOFTWAREALA A:26 , ASP A:140 , GLU A:195 , HOH A:552binding site for residue EDO A 303
04AC4SOFTWAREARG A:74 , HIS A:151 , LYS A:177 , ARG A:182 , CU A:311binding site for residue SO4 A 304
05AC5SOFTWAREHIS A:67 , ASN A:102 , HIS A:104 , HOH A:428binding site for residue CU1 A 305
06AC6SOFTWAREASP A:3 , HIS A:9 , HOH A:425 , HOH A:431 , HOH A:435binding site for residue CU A 306
07AC7SOFTWAREHIS A:95 , ASP A:158 , ASP A:220 , HOH A:407 , HOH A:451binding site for residue CU A 307
08AC8SOFTWAREASP A:25 , ARG A:57 , HOH A:515 , HOH A:557binding site for residue CU A 308
09AC9SOFTWAREASP A:116 , ASP A:133 , CU A:318 , HOH A:404 , HOH A:448binding site for residue CU A 309
10AD1SOFTWAREASP A:207 , HOH A:558binding site for residue CU A 310
11AD2SOFTWAREHIS A:151 , ASN A:153 , SO4 A:304binding site for residue CU A 311
12AD3SOFTWAREASP A:160 , HOH A:555binding site for residue CU A 312
13AD4SOFTWAREGLU A:112 , EDO A:302 , HOH A:455binding site for residue CU A 313
14AD5SOFTWAREGLU A:238 , HOH A:560binding site for residue CU A 314
15AD6SOFTWAREASP A:11 , HOH A:434 , HOH A:445 , HOH A:551binding site for residue CU A 315
16AD7SOFTWAREASP A:81 , GLU A:82 , CU A:319binding site for residue CU A 316
17AD8SOFTWAREASP A:79 , HOH A:559binding site for residue CU A 317
18AD9SOFTWAREASP A:116 , CU A:309 , CL A:321 , HOH A:404 , HOH A:448 , HOH A:550binding site for residue CU A 318
19AE1SOFTWAREASP A:80 , ASP A:81 , CU A:316binding site for residue CU A 319
20AE2SOFTWAREGLU A:90 , HOH A:536 , HOH A:556binding site for residue CU A 320
21AE3SOFTWARECU A:318 , HOH A:550binding site for residue CL A 321
22AE4SOFTWAREASP A:81binding site for residue CL A 322

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4TM7)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Val A:136 -Pro A:137
2Pro A:178 -Pro A:179

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4TM7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4TM7)

(-) Exons   (0, 0)

(no "Exon" information available for 4TM7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:243
                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh.eeeee..hhhhhhhhhhhhhhhhhhhhh.eeeee.eee........hhhhhhhhhhhhhh..hhhhh............hhhhhhhhhhhhhhhhhhhh...eeeeee..............hhhhhh....eeee.........eeeehhhhhh.eeeeeeee.hhhhhhhhhhhhh......hhhhhh....eeeeeee....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tm7 A   2 SDTVIERHADTAALVAAAGDRLVDAISSAIGERGQATIVLTGGGTGIGLLKRVRERSGEIDWSKVHIYWGDERFVPQDDDERNDKQAREALLDHIGIPPVNVHAMAASDGEFGDDLEAAAAGYAQLLSADFDSSVPGFDVHLLGMGGEGHVNSLFPDTDAVRETERLVVGVSDSPKPPPRRITLTLPAVQNSREVWLVVSGEAKADAVAAAVGGADPVDIPAAGAVGRERTVWLVDEAAAAKL 244
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4TM7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4TM7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4TM7)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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        A0QWX6_MYCS2 | A0QWX6: 3oc6 4tm8

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4tm8