4S1O - JenaLib

Title :   STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS NADD IN COMPLEX WITH NADP

Authors :   K. V. Korotkov

Date :   14 Jan 15 (Deposition) - 20 Jan 16 (Release) - 27 Jan 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.84

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: A,B  (2x)
Biol. Unit 4: A,B  (1x)
Biol. Unit 5: A  (2x)
Biol. Unit 6: B  (2x)

Keywords :   Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. V. Korotkov
Structure Of Mycobacterium Tuberculosis Protein
To Be Published
PubMed: search

Compounds

Molecule 1 - PROBABLE NICOTINATE-NUCLEOTIDE ADENYLYLTRANSFERASE
	Chains	:	A, B
	EC Number	:	2.7.7.18
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PRSF-NT
	Expression System Strain	:	ROSETTA2(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	RESIDUES 3-200
	Gene	:	LH57_13225, NADD, P425_02519, RV2421C, RVBD_2421C
	Mutation	:	YES
	Organism Scientific	:	MYCOBACTERIUM TUBERCULOSIS
	Organism Taxid	:	83332
	Strain	:	H37RV
	Synonym	:	DEAMIDO-NAD(+) DIPHOSPHORYLASE, DEAMIDO-NAD(+) PYROPHOSPHORYLASE, NICOTINATE MONONUCLEOTIDE ADENYLYLTRANSFERASE

Structural Features

Chains, Units

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (2x)	:	A	B
Biological Unit 4 (1x)	:	A	B
Biological Unit 5 (2x)	:	A
Biological Unit 6 (2x)	:		B

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (2, 4)

Asymmetric Unit (2, 4)

No.	Name	Count	Type	Full Name
1	CL	2	Ligand/Ion	CHLORIDE ION
2	NAP	2	Ligand/Ion	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	NAP	1	Ligand/Ion	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	NAP	1	Ligand/Ion	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

Biological Unit 3 (1, 4)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	NAP	4	Ligand/Ion	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

Biological Unit 4 (1, 2)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	NAP	2	Ligand/Ion	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

Biological Unit 5 (1, 2)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	NAP	2	Ligand/Ion	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

Biological Unit 6 (1, 2)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	NAP	2	Ligand/Ion	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

Sites (4, 4)

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	MET A:9 , GLY A:10 , GLY A:11 , THR A:12 , HIS A:17 , HIS A:20 , THR A:84 , TYR A:85 , THR A:86 , PHE A:104 , THR A:106 , GLY A:107 , TRP A:117 , GLN A:118 , VAL A:132 , SER A:167 , SER A:168 , HOH A:405 , HOH A:408 , HOH A:413 , HOH A:418 , HOH A:421 , HOH A:422 , HOH A:439 , HOH A:442 , HOH A:446 , HOH A:463 , HOH A:473 , HOH A:489 , HOH A:505	BINDING SITE FOR RESIDUE NAP A 301
2	AC2	SOFTWARE	VAL A:73 , HOH A:520 , HOH B:416	BINDING SITE FOR RESIDUE CL A 302
3	AC3	SOFTWARE	MET B:9 , GLY B:10 , GLY B:11 , THR B:12 , HIS B:17 , HIS B:20 , SER B:41 , THR B:84 , TYR B:85 , THR B:86 , THR B:106 , GLY B:107 , ALA B:110 , ILE B:114 , TRP B:117 , VAL B:132 , SER B:167 , SER B:168 , HOH B:405 , HOH B:424 , HOH B:429 , HOH B:432 , HOH B:437 , HOH B:455 , HOH B:457 , HOH B:458 , HOH B:477 , HOH B:492	BINDING SITE FOR RESIDUE NAP B 301
4	AC4	SOFTWARE	VAL B:73 , HOH B:440	BINDING SITE FOR RESIDUE CL B 302

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:175
                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhhhhhhhh...eeeeee......hhhhhhhhhhhhhh....eee.hhhhhhh...hhhhhhhhhhhhh...eeeeeeehhhhhhhhhh.hhhhhhhheeeeeee......eeeee.hhhhhhhhhhhhhhhh........hhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4s1o A   4 RRLGVMGGTFDPIHYGHLVAASEVADLFDLDEVVFVPSGQPVSAAEHRYLMTVIATASNPRFSVSRVDIDRGGPTYTKDTLADLHALHPDSELYFTTGADALASIMSWQGWEELFELARFVGVSRPGYDALTLVEIPALAISSTDCRQRAEQSRPLWYLMPDGVVQYVSKRRLYT 200
                                    13        23        33        43||      59        69        79        89        99       109       119       129       155       165       175       185       195     
                                                                   44|                                                                                   137|                                              
                                                                    51                                                                                    154

Chain B from PDB  Type:PROTEIN  Length:171
                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhhhhhhhh...eeeeee......hhhhhhhhhhhhhh....eee.hhhhhhh...hhhhhhhhhhhhh...eeeeeeehhhhhhhhh..hhhhh..eeeeee....eeeee.hhhhhhhhhhhhhhhh........hhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4s1o B   4 RRLGVMGGTFDPIHYGHLVAASEVADLFDLDEVVFVPSGQPVSAAEHRYLMTVIATASNPRFSVSRVDIDRGGPTYTKDTLADLHALHPDSELYFTTGADALASIMSWWEELFELARFVGVSRPGALTLVEIPALAISSTDCRQRAEQSRPLWYLMPDGVVQYVSKRRLYT 200
                                    13        23        33        43||      59        69        79        89        99       109       121       131    || 159       169       179       189       199 
                                                                   44|                                                               117|             136|                                             
                                                                    51                                                                120              155

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (12, 21)

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	4s1o
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Description