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(-) Description

Title :  STRUCTURE OF URANOTAENIA SAPPHIRINA CYPOVIRUS (CPV17) POLYHEDRIN AT 100 K
 
Authors :  H. M. Ginn, M. Messerschmidt, X. Ji, H. Zhang, D. Axford, R. J. Gildea, G. A. S. Brewster, J. Hattne, A. Wagner, J. M. Grimes, G. Evans, N. K. Saute G. Sutton, D. I. Stuart
Date :  14 Jan 15  (Deposition) - 25 Mar 15  (Release) - 25 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Polyhedrin, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. M. Ginn, M. Messerschmidt, X. Ji, H. Zhang, D. Axford, R. J. Gildea, G. Winter, A. S. Brewster, J. Hattne, A. Wagner, J. M. Grimes, G. Evans, N. K. Sauter, G. Sutton, D. I. Stuart
Structure Of Cpv17 Polyhedrin Determined By The Improved Analysis Of Serial Femtosecond Crystallographic Data.
Nat Commun V. 6 6435 2015
PubMed-ID: 25751308  |  Reference-DOI: 10.1038/NCOMMS7435

(-) Compounds

Molecule 1 - POLYHEDRIN
    Chains: A
    Organism Scientific: URANOTAENIA SAPPHIRINA CYPOVIRUS
    Organism Taxid: 311554

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
1ATP1Ligand/IonADENOSINE-5'-TRIPHOSPHATE
2MG1Ligand/IonMAGNESIUM ION
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1ATP3Ligand/IonADENOSINE-5'-TRIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:8 , ASP A:151 , LEU A:152 , PRO A:153 , SER A:154 , CYS A:155 , GLY A:156 , GLY A:157 , ARG A:158 , LEU A:230 , SER A:234 , MG A:302 , HOH A:433 , HOH A:471 , HOH A:533 , HOH A:534BINDING SITE FOR RESIDUE ATP A 301
2AC2SOFTWAREATP A:301 , HOH A:471 , HOH A:527 , HOH A:533BINDING SITE FOR RESIDUE MG A 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4S1K)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4S1K)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4S1K)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4S1K)

(-) Exons   (0, 0)

(no "Exon" information available for 4S1K)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:236
                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhh....eeeeeeee.....eeeeeeee..eeeeeehhhhhh..ee..ee.hhhhhhhhhhhhhh.........hhhhh..eeeeeee........eeeee...........hhhhh...hhhhhhhhhheee.......eeeeeee......eeeeeee............hhhhhhhhhh.....eeeee.hhhhhhhhhhhhhh..ee.....ee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4s1k A   2 ADLSLARQRLTDESVNEAPRAYDANMELVIVAEYPEGQCKSFHFANPFVIKGVIKSSELMWDIDNGHQMSEYELQRSINGYAASHSNMRQRSAINRIPKKLSFYLRGNVDWNKASIDIRGPTGLSMRQTEEYSLDRIRPPCSYKRNKFVDLPSCGGRCEKAWYVELDGRPVSIAVIVPRNMHNGINLYAGPLLGNVIEGLDTVPECTQWFDNAPELYAYHASNYGMTMLDQFSVIH 237
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4S1K)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4S1K)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4S1K)

(-) Gene Ontology  (2, 2)

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        Q5EK29_9REOV | Q5EK29: 4s1l 4zqx

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4s1l