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(-) Description

Title :  DNA RECOGNITION DOMAIN OF THE CYTOSINE MODIFICATION-DEPENDENT RESTRICTION ENDONUCLEASE LPNPI
 
Authors :  G. Sasnauskas, G. Tamulaitiene, V. Siksnys
Date :  22 Dec 14  (Deposition) - 10 Jun 15  (Release) - 26 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Cytosine Modification, Sra Domain, Lpnpi, Restriction Endonuclease, Dna Binding, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Sasnauskas, E. Zagorskaite, K. Kauneckaite, G. Tamulaitiene, V. Siksnys
Structure-Guided Sequence Specificity Engineering Of The Modification-Dependent Restriction Endonuclease Lpnpi.
Nucleic Acids Res. V. 43 6144 2015
PubMed-ID: 26001968  |  Reference-DOI: 10.1093/NAR/GKV548

(-) Compounds

Molecule 1 - RESTRICTION ENDONUCLEASE LPNPI
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PLATE11
    Expression System Strain: ER2566
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: N-TERMINAL DOMAIN (UNP RESIDUES 2-224)
    Gene: AAU27318, LPG1234
    Organism Scientific: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA STR. PHILADELPHIA 1
    Organism Taxid: 272624
    Strain: PHILADELPHIA 1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
11PE-1Ligand/IonPENTAETHYLENE GLYCOL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:196 , ASP A:200 , TYR A:207 , HOH A:431 , HOH A:605 , PRO B:196 , ASP B:200 , TYR B:207 , HOH B:465BINDING SITE FOR RESIDUE 1PE A 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4RZL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4RZL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RZL)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 4RZL)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:227
                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eehhhhhhhh.ee...ee......hhhhhhhhhhh........eeee.......eeeeee.........eee....eeeee...............hhhhhhhhhhhhhh...........eeeeee.........eeeeeeeee..........eeeeeeee..eeeeeeeeeeee....eehhhhhhh..hhhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rzl A  -2 HHHGKIYSFDTLANADLIIDAVYEGGSSGNASDDPISKIIKGIGNMGGFRSAGQGIFKKLIVLYTNMEDGDWPDSIDTSKGQFIYYGDNKHPGHDIHDTPRQGNATLKMLFDSTHNEKDARRIVPPIFIFVKYPTASSSRSVQFKGVAVPGYPGLSATDDLIAVWKTTNGQRFQNYRAIFTILNIPMVSRKWINSLFDPFGQDNSLNPFYQWKISGKADVLIAPSTK 224
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       


Chain B from PDB  Type:PROTEIN  Length:227
                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eehhhhhhhh.ee...ee......hhhhhhhhhhh........eeee.......eeeeee.........eee....eeeee...............hhhhhhhhhhhhhh...........eeeeee.........eeeeeeeee..........eeeeeeee..eeeeeeeeeeee....eehhhhhhh..hhhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rzl B  -2 HHHGKIYSFDTLANADLIIDAVYEGGSSGNASDDPISKIIKGIGNMGGFRSAGQGIFKKLIVLYTNMEDGDWPDSIDTSKGQFIYYGDNKHPGHDIHDTPRQGNATLKMLFDSTHNEKDARRIVPPIFIFVKYPTASSSRSVQFKGVAVPGYPGLSATDDLIAVWKTTNGQRFQNYRAIFTILNIPMVSRKWINSLFDPFGQDNSLNPFYQWKISGKADVLIAPSTK 224
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RZL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RZL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RZL)

(-) Gene Ontology  (4, 4)

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