4RYS - JenaLib

Title :   CRYSTAL STRUCTURE OF THE GREEN FLUORESCENT ROTEIN NOWGFP (THE VARIANT OF CYAN CERULEAN) AT PH 4.8

Authors :   V. Z. Pletnev, N. V. Pletneva, S. V. Pletnev

Date :   17 Dec 14 (Deposition) - 02 Sep 15 (Release) - 02 Sep 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.18

Chains :   Asym./Biol. Unit : A

Keywords :   Fluorescent Protein, Nowgfp, Twg Chromophore, Beta-Barrel, Variant Of Cyan Cerulean (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   V. Z. Pletnev, N. V. Pletneva, K. S. Sarkisyan, A. S. Mishin, K. A. Lukyanov, E. A. Goryacheva, R. H. Ziganshin, Z. Dauter, S. Pletne
Structure Of The Green Fluorescent Protein Nowgfp With An Anionic Tryptophan-Based Chromophore.
Acta Crystallogr. , Sect. D V. 71 1699 2015
PubMed-ID: 26249350 | Reference-DOI: 10.1107/S1399004715010159

Compounds

Molecule 1 - NOWGFP
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organism Scientific	:	CFP MARKER PLASMID PWM1009
	Organism Taxid	:	141850

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 7)

Asymmetric/Biological Unit (2, 7)

No.	Name	Count	Type	Full Name
1	CRF	1	Mod. Amino Acid	[(4Z)-2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(1H-INDOL-3-YLMETHYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC ACID
2	GOL	6	Ligand/Ion	GLYCEROL

Sites (6, 6)

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LEU A:53 , VAL A:55 , PRO A:56 , TRP A:57 , PRO A:58 , HIS A:139 , TYR A:143 , HOH A:480 , HOH A:513 , HOH A:570 , HOH A:594	BINDING SITE FOR RESIDUE GOL A 301
2	AC2	SOFTWARE	ASP A:102 , ASP A:103 , LYS A:131 , GLY A:134 , ASN A:135 , ILE A:136 , HOH A:626 , HOH A:670	BINDING SITE FOR RESIDUE GOL A 302
3	AC3	SOFTWARE	ARG A:109 , GLU A:111 , ARG A:122 , GLU A:124 , GOL A:305 , HOH A:646	BINDING SITE FOR RESIDUE GOL A 303
4	AC4	SOFTWARE	ILE A:146 , SER A:147 , ILE A:167 , ARG A:168 , HOH A:511 , HOH A:661 , HOH A:682	BINDING SITE FOR RESIDUE GOL A 304
5	AC5	SOFTWARE	GLU A:17 , LEU A:18 , ASP A:19 , TYR A:39 , ARG A:122 , ILE A:123 , GOL A:303 , HOH A:601	BINDING SITE FOR RESIDUE GOL A 305
6	AC6	SOFTWARE	THR A:49 , THR A:50 , GLY A:51 , ASP A:173 , HOH A:592 , HOH A:648	BINDING SITE FOR RESIDUE GOL A 306

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:230
                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhh..eeeeeeeeeee..eeeeeeeeeeeehhh.eeeeeeee.......hhhhhh....hhhhh..hhhhhhhhhhhhh....eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee...................eeeeeeeehhhheeeeeeeeeee.....eeeeeeeeeeee...........eeeeeeeeee........eeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rys A   0 SVSKGEKLFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKMSLKFICTTGKLPVPWPTLKTTLtMQCFARYPDHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGVDFKEDGNILGHKLEYNAISGNANITADKQKNGIKAYFTIRHDVEDGSVLLADHYQQNTPIGDGPVLLPDNHYLSTQSKQSKDPNEKRDHMVLLEFVTAAGIPL 231
                                     9        19        29        39        49        59     || 71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231
                                                                                            65-CRF                                                                                                                                                                
                                                                                             68

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Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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Description