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(-) Description

Title :  CRYSTAL STRUCTURE OF ABC TRANSPORTER SOLUTE BINDING PROTEIN AVI_3567 FROM AGROBACTERIUM VITIS S4, TARGET EFI-510645, WITH BOUND D-MANNITOL
 
Authors :  Y. Patskovsky, R. Toro, R. Bhosle, N. Al Obaidi, L. L. Morisco, S. R. Was S. Chamala, J. D. Attonito, A. Scott Glenn, S. Chowdhury, J. Lafleur, B. Hillerich, R. D. Siedel, J. Love, K. L. Whalen, J. A. Gerlt, S. C. Almo Function Initiative (Efi)
Date :  13 Dec 14  (Deposition) - 24 Dec 14  (Release) - 31 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Sugar Transporter, Abc-Type, Enzyme Function Initiative, Efi, Structural Genomics, Transport Protein, Mannitol (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Patskovsky, R. Toro, R. Bhosle, N. Al Obaidi, S. Chamala, A. Scott Glenn, J. D. Attonito, S. Chowdhury, J. Lafleur, R. D. Siedel L. L. Morisco, S. R. Wasserman, B. Hillerich, J. Love, K. L. Whalen, J. A. Gerlt, S. C. Almo
Crystal Structure Of Periplasmic Solute-Binding Protein Avi_3567 From Agrobacterium Vitis, Target Efi-510645
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ABC TRANSPORTER SUBSTRATE BINDING PROTEIN (SORBITOL)
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: AVI_3567
    Organism Scientific: AGROBACTERIUM VITIS S4
    Organism Taxid: 311402
    Strain: S4 / ATCC BAA-846

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2MTL1Ligand/IonD-MANNITOL

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:32 , GLU A:61 , ARG A:65 , TYR A:135 , GLU A:137 , ARG A:184 , GLY A:190 , TRP A:300 , TRP A:302 , GLN A:388 , HOH A:754BINDING SITE FOR RESIDUE MTL A 501
2AC2SOFTWARELYS A:294 , ARG A:295 , GLY A:296 , SER A:371 , ASP A:373 , HOH A:652 , HOH A:781 , HOH A:803BINDING SITE FOR RESIDUE ACT A 502

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:182 -A:257

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Tyr A:436 -Pro A:437

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RYA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RYA)

(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:417
                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee.hhhhhhhhh.hhhhhhhh..eeeeeeeehhhhhhhhhhhhhhh......eeeee.hhhhhhhhh.....hhhhhhh...hhhhhhhhhhhh.ee..ee..eeeeee.eeeeeehhhhhhhh.......hhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh....eeeee.hhhhhhh......hhh.eeeee.............eeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh.hhhhhhhhhhhh.....................hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rya A  22 AETLTIATVNNGDMIRMQKLTDDFTKKNPGIDVKWVTLEENVLRQKVTTDVATKGGQYDVMTIGIYEAPIWGKQGWLAPLDKLSADKDYDAADLLPPVRSGLTVDGKLYAAPFYAESSMVMYRKDLFEKAGLKMPEAPTWDFIKEAADKITDKSKEVYGICLRGKAGWGENIAFLSAMSNSFGARWFDEQWKPQFDQPEWKKTLQFYVDLMKKNGPPGASSNGFNENLALFQTGKCGMWIDATVAASFVTNPKESKVADQVGFALAPDNGLGKRGNWLWSWNLAIPAGSKKVEAAEKFIAWATSKDYLKLVAEKDGWANVPPGTRTSLYANADYQKAAPFAKMTLDSINSADPKHPTVKPVPYEGVQYVAIPEFQGIGTAVGQQFSAALAGQTTVDQALKTAQTLTEREMKKAGYPK 438
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RYA)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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