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(-) Description

Title :  CRYSTAL STRUCTURE OF PERIPLASMIC ABC TRANSPORTER SOLUTE BINDING PROTEIN A7JW62 FROM MANNHEIMIA HAEMOLYTICA PHL213, TARGET EFI-511105, IN COMPLEX WITH MYO-INOSITOL
 
Authors :  Y. Patskovsky, R. Toro, R. Bhosle, N. Al Obaidi, L. L. Morisco, S. R. Was S. Chamala, J. D. Attonito, A. Scott Glenn, S. Chowdhury, J. Lafleur, B. Hillerich, R. D. Siedel, J. Love, K. L. Whalen, J. A. Gerlt, S. C. Almo Function Initiative (Efi)
Date :  11 Dec 14  (Deposition) - 24 Dec 14  (Release) - 24 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Transporter, Abc-Type, Enzyme Function Initiative, Efi, Structural Genomics, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Patskovsky, R. Toro, R. Bhosle, N. Al Obaidi, S. Chamala, A. Scott Glenn, J. D. Attonito, S. Chowdhury, J. Lafleur, R. D. Siedel L. L. Morisco, S. R. Wasserman, B. Hillerich, J. Love, K. L. Whalen, J. A. Gerlt, S. C. Almo
Crystal Structure Of Solute Binding Sugar Transporter A7Jw6 From Mannheimia Haemolytica, Target Efi-511105.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - POSSIBLE SUGAR ABC SUPERFAMILY ATP BINDING CASSETTE TRANSPORTER, BINDING PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 23-312
    Gene: MHA_2416
    Organism Scientific: MANNHEIMIA HAEMOLYTICA
    Organism Taxid: 272629
    Strain: PHL213

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 5)

Asymmetric Unit (4, 5)
No.NameCountTypeFull Name
1ASP1Mod. Amino AcidASPARTIC ACID
2BGC1Ligand/IonBETA-D-GLUCOSE
3CL1Ligand/IonCHLORIDE ION
4INS2Ligand/Ion1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1ASP-1Mod. Amino AcidASPARTIC ACID
2BGC1Ligand/IonBETA-D-GLUCOSE
3CL-1Ligand/IonCHLORIDE ION
4INS1Ligand/Ion1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1ASP1Mod. Amino AcidASPARTIC ACID
2BGC-1Ligand/IonBETA-D-GLUCOSE
3CL-1Ligand/IonCHLORIDE ION
4INS1Ligand/Ion1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:38 , GLU A:39 , ASP A:112 , ARG A:113 , SER A:160 , ARG A:164 , TRP A:189 , ASN A:216 , ASP A:243 , GLN A:263 , HOH A:504 , HOH A:524BINDING SITE FOR RESIDUE INS A 401
2AC2SOFTWARELYS A:23 , ASP A:24 , SER A:50 , GLU A:54 , ILE A:55 , HOH A:512 , HOH A:521 , HOH A:696 , HOH A:738 , GLU B:199BINDING SITE FOR RESIDUE BGC A 402
3AC3SOFTWAREPHE B:38 , GLU B:39 , ASP B:112 , ARG B:113 , SER B:160 , ARG B:164 , TRP B:189 , ASN B:216 , ASP B:243 , GLN B:263 , HOH B:509 , HOH B:511BINDING SITE FOR RESIDUE INS B 401
4AC4SOFTWARELEU A:60 , ARG A:79 , VAL B:183 , ASP B:184 , GLN B:185BINDING SITE FOR RESIDUE CL B 402
5AC5SOFTWAREASN A:75 , ARG A:79 , VAL B:182 , LEU B:205 , LYS B:206 , GLU B:207 , HOH B:613BINDING SITE FOR RESIDUE ASP B 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4RXM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4RXM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RXM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RXM)

(-) Exons   (0, 0)

(no "Exon" information available for 4RXM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:291
                                                                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee....hhhhhhhhhhhhhhhhhhh.eeeeee...hhhhhhhhhhhhhhh...eeee.......hhhhhhhhhhh...eeee...........eeeehhhhhhhhhhhhhhhhh...eeeeeee....hhhhhhhhhhhhhhhhhhh..eeeeeeee...hhhhhhhhhhhhhhhh.....eeee.hhhhhhhhhhhhhhh.......eee....hhhhhhhhhh.....eee.hhhhhhhhhhhhhhhhhhhh.....eee..eeehhhhhhhh.hhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rxm A  21 SMKDELVVFSLPNLSSPFEVQLQKVAVETSKKLEIKLQVLDGQSSSTKQASDLENAITRGAKGIIISPNDVNAISGAVEEIIKEKIPAATLDRKVESSKPVPHFGANNYTGGQEVAKAVKAKYPNGAKIILLTGQPGSTSNIERTKGIRDELAAGGDKYKIVVDQTGNWLRSEGLRIIESVLPTLKEKPEVIISANDDMALGAIEALRSQGLKAGDILVTGFDSTPEALARVKDGWLYLTADQRPSFAVSTALEQVVGNIRESKEVSGADYPPKIILKDNLQEAERFAEIS 311
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310 


Chain B from PDB  Type:PROTEIN  Length:288
                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeee....hhhhhhhhhhhhhhhhhhh.eeeeee...hhhhhhhhhhhhhhh...eeee.......hhhhhhhhhhh...eeee...........eeeehhhhhhhhhhhhhhhhh...eeeeeee....hhhhhhhhhhhhhhhhh....eeeeeeee...hhhhhhhhhhhhhhhh.....eeee.hhhhhhhhhhhhhhh.......eee....hhhhhhhhhhh....eee.hhhhhhhhhhhhhhhhhhhh.....eee..eeehhhhhhhh.hhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4rxm B  23 KDELVVFSLPNLSSPFEVQLQKVAVETSKKLEIKLQVLDGQSSSTKQASDLENAITRGAKGIIISPNDVNAISGAVEEIIKEKIPAATLDRKVESSKPVPHFGANNYTGGQEVAKAVKAKYPNGAKIILLTGQPGSTSNIERTKGIRDELAAGGDKYKIVVDQTGNWLRSEGLRIIESVLPTLKEKPEVIISANDDMALGAIEALRSQGLKAGDILVTGFDSTPEALARVKDGWLYLTADQRPSFAVSTALEQVVGNIRESKEVSGADYPPKIILKDNLQEAERFAEI 310
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RXM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RXM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RXM)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4RXM)

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