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(-) Description

Title :  CRYSTAL STRUCTURE OF PIP3 BOUND HUMAN NUCLEAR RECEPTOR LRH-1 (LIVER RECEPTOR HOMOLOG 1, NR5A2) IN COMPLEX WITH A CO-REGULATOR DAX-1 (NR0B1) PEPTIDE AT 1.86 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg), Partnership For Biology, Partnership For Stem Cell Biology (Stemcell)
Date :  05 Dec 14  (Deposition) - 21 Jan 15  (Release) - 21 Jan 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.86
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Ligand-Binding Domain Of Nuclear Hormone Receptor, Pf00104 Family, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology, Partnership For Stem Cell Biology, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg), Partnership For Stem Cell Biology
Crystal Structure Of A Homo Sapiens Hepatocytic Transcription Factor Hb1F-2 (B1F2) In Complex With Nuclear Receptor Subfamily 0 Group B Member 1 (Nr0B1, Residues 140-154) From Human At 1. 86 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - NUCLEAR RECEPTOR SUBFAMILY 5 GROUP A MEMBER 2
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PRSF-2 EK/LIC LIGATION INDEPENDENT CLONING
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: LIGAND BINDING DOMAIN (UNP RESIDUES 294-551)
    Gene: B1F, CPF, FTF, NR5A2, RC2754B.LRH_1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ALPHA-1-FETOPROTEIN TRANSCRIPTION FACTOR, B1-BINDING FACTOR, HB1F, CYP7A PROMOTER-BINDING FACTOR, HEPATOCYTIC TRANSCRIPTION FACTOR, LIVER RECEPTOR HOMOLOG 1, LRH-1
 
Molecule 2 - NUCLEAR RECEPTOR DAX1
    Chains: B
    Engineered: YES
    Fragment: UNP RESIDUES 140-154
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: COMES FROM SCREENING BUFFER AS A PEPTIDE
    Synonym: NUCLEAR RECEPTOR SUBFAMILY 0, GROUP B, MEMBER 1
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 8)

Asymmetric/Biological Unit (4, 8)
No.NameCountTypeFull Name
1CSO1Mod. Amino AcidS-HYDROXYCYSTEINE
2EDO5Ligand/Ion1,2-ETHANEDIOL
3PIZ1Ligand/Ion(2S)-3-{[(R)-{[(1S,2S,3R,4S,5S,6S)-2,6-DIHYDROXY-3,4,5-TRIS(PHOSPHONOOXY)CYCLOHEXYL]OXY}(HYDROXY)PHOSPHORYL]OXY}PROPANE-1,2-DIYL DIHEXADECANOATE
4TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:342 , ILE A:416 , GLN A:419 , ALA A:420 , GLY A:421 , ALA A:422 , THR A:423 , LEU A:424 , ALA A:513 , TYR A:516 , LYS A:520 , HIS A:537 , HOH A:716 , HOH A:737 , HOH A:765 , HOH A:771 , HOH A:779 , HOH A:780 , HOH A:882 , HOH A:891 , HOH A:892 , HOH A:893 , PRO B:140 , ARG B:141BINDING SITE FOR RESIDUE PIZ A 601
2AC2SOFTWAREMET A:323 , LEU A:326 , GLN A:409 , TYR A:518 , TYR A:519 , LEU A:522BINDING SITE FOR RESIDUE EDO A 602
3AC3SOFTWAREASN A:426 , HIS A:430 , ALA A:508 , GLN A:512BINDING SITE FOR RESIDUE EDO A 603
4AC4SOFTWAREPRO A:298 , ASP A:444 , ARG A:446 , TYR A:489BINDING SITE FOR RESIDUE EDO A 604
5AC5SOFTWARELYS A:370 , ASP A:372 , SER A:429 , HIS A:430 , HOH A:741 , HOH A:910BINDING SITE FOR RESIDUE EDO A 605
6AC6SOFTWAREGLN A:474 , ASN A:478 , LEU A:503BINDING SITE FOR RESIDUE EDO A 606
7AC7SOFTWAREHOH A:834 , PRO B:140 , ARG B:141 , GLN B:142 , SER B:144 , TYR B:147 , HOH B:303 , HOH B:305BINDING SITE FOR RESIDUE TRS B 201

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:487 -A:487

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4RWV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RWV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RWV)

(-) Exons   (0, 0)

(no "Exon" information available for 4RWV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:243
                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhh..hhhhhhhhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eee.....eeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rwv A 297 SPASIPHLILELLKcEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAK 539
                                   306    |  316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536   
                                        311-CSO                                                                                                                                                                                                                                


Chain B from PDB  Type:PROTEIN  Length:15
                                               
               SCOP domains --------------- SCOP domains
               CATH domains --------------- CATH domains
               Pfam domains --------------- Pfam domains
         Sec.struct. author ....hhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------- SAPs(SNPs)
                    PROSITE --------------- PROSITE
                 Transcript --------------- Transcript
                 4rwv B 140 PRQGSILYSLLTSSK 154
                                   149
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RWV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RWV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RWV)

(-) Gene Ontology  (69, 105)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NR5A2_HUMAN | O00482: 1yok 1yuc 1zdu 2a66 3plz 3tx7 4dor 4dos 4is8 4oni 4pld 4ple 5l0m 5l11 5syz 5unj

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