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(-) Description

Title :  CRYSTAL STRUCTURE OF A PENTAFLUORO-PHE INCORPORATED PHOSPHATIDYLINOSITOL-SPECIFIC PHOSPHOLIPASE C (H258X)FROM STAPHYLOCOCCUS AUREUS
 
Authors :  T. He, A. Gershenson, S. J. Eyles, J. Gao, M. F. Roberts
Date :  24 Nov 14  (Deposition) - 01 Jul 15  (Release) - 19 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Cation-Pi, Tim Barrel, Encoded Unnatural Amino Acid Phospholipase, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. He, A. Gershenson, S. J. Eyles, Y. J. Lee, W. R. Liu, J. Wang, J. Gao, M. F. Roberts
Fluorinated Aromatic Amino Acids Distinguish Cation-Pi Interactions From Membrane Insertion.
J. Biol. Chem. V. 290 19334 2015
PubMed-ID: 26092728  |  Reference-DOI: 10.1074/JBC.M115.668343

(-) Compounds

Molecule 1 - 1-PHOSPHATIDYLINOSITOL PHOSPHODIESTERASE
    Chains: A
    EC Number: 4.6.1.13
    Mutation: YES
    Organism Scientific: STAPHYLOCOCCUS AUREUS
    Organism Taxid: 426430
    Strain: NEWMAN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2INS1Ligand/Ion1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE
3PF51Mod. Amino Acid2,3,4,5,6-PENTAFLUORO-L-PHENYLALANINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:37 , LYS A:38 , ASP A:39 , LYS A:42 , HIS A:86BINDING SITE FOR RESIDUE ACT A 401
2AC2SOFTWAREHIS A:30 , ARG A:67 , LYS A:113 , ARG A:166 , ASP A:206 , HOH A:503 , HOH A:546 , HOH A:563BINDING SITE FOR RESIDUE INS A 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4RV3)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4RV3)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RV3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RV3)

(-) Exons   (0, 0)

(no "Exon" information available for 4RV3)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:302
                                                                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh....hhhhh.eeee.hhhhhhh.hhhhhhhhh....hhhhhhhh...eeeeeeeeee..eeeeee..eeeeeehhhhhhhhhhhhhhh....eeeeeee..........hhhhhhhhhh..................hhhhhh..eeeeee......................eeeeeee....eeeeeee....hhhhhhhhhhhhhhhhhh.....eeeeee.......hhhhhhhhhhhhhhhhhhhhhhh.......eeee...........hhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rv3 A   2 DSLSKSPENWMSKLDDGKHLTEINIPGSHDSGSFTLKDPVKSVWAKTQDKDYLTQMKSGVRFFDIRGRASADNMISVHHGMVYLHHELGKFLDDAKYYLSAYPNETIVMSMKKDYDSDSKVTKTFEEIFREYYYNNPQYQNLFYTGSNANPTLKETKGKIVLFNRMGGTYIKSGYGADTSGIQWADNATFETKINNGSLNLKVQDEYKDYYDKKVEAVKNLLAKAKTDSNKDNVYVNFLSVASGGSAFNSTYNYASfINPEIAKTIKANGKARTGWLIVDYAGYTWPGYDDIVSEIIDSNKL 303
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251      |261       271       281       291       301  
                                                                                                                                                                                                                                                                                          258-PF5
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RV3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RV3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RV3)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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  4rv3
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  4.6.1.13
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PLC_STAAE | P45723: 3v16 3v18 3v1h 4f2b 4f2t 4f2u 4i8y 4i90 4i9j 4i9m 4i9t 4s3g

(-) Related Entries Specified in the PDB File

3v16 PI-PLC FROM S. AUREUS