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(-) Description

Title :  A CRYSTAL FORM OF RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE(SLASH) OXYGENASE FROM NICOTIANA TABACUM IN THE ACTIVATED STATE
 
Authors :  H. Schreuder, D. Cascio, P. M. G. Curmi, D. Eisenberg
Date :  25 May 90  (Deposition) - 15 Oct 92  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D,S,T,U,V
Biol. Unit 1:  A,B,C,D,S,T,U,V  (2x)
Keywords :  Lyase(Carbon-Carbon) (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. W. Suh, D. Cascio, M. S. Chapman, D. Eisenberg
A Crystal Form Of Ribulose-1, 5-Bisphosphate Carboxylase/Oxygenase From Nicotiana Tabacum In The Activated State.
J. Mol. Biol. V. 197 363 1987
PubMed-ID: 3681999  |  Reference-DOI: 10.1016/0022-2836(87)90129-X

(-) Compounds

Molecule 1 - RIBULOSE 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE (FORM IV)
    Chains: A, B, C, D
    EC Number: 4.1.1.39
    Engineered: YES
    Organism Common: COMMON TOBACCO
    Organism Scientific: NICOTIANA TABACUM
    Organism Taxid: 4097
 
Molecule 2 - RIBULOSE 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE (FORM IV)
    Chains: S, T, U, V
    EC Number: 4.1.1.39
    Engineered: YES
    Organism Common: COMMON TOBACCO
    Organism Scientific: NICOTIANA TABACUM
    Organism Taxid: 4097

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDSTUV
Biological Unit 1 (2x): ABCDSTUV

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 12)

Asymmetric Unit (3, 12)
No.NameCountTypeFull Name
1CAP4Ligand/Ion2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
2FMT4Ligand/IonFORMIC ACID
3MG4Ligand/IonMAGNESIUM ION
Biological Unit 1 (2, 16)
No.NameCountTypeFull Name
1CAP8Ligand/Ion2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
2FMT8Ligand/IonFORMIC ACID
3MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:203 , GLU A:204 , HIS A:294 , CAP A:490 , FMT A:492BINDING SITE FOR RESIDUE MG A 491
02AC2SOFTWAREASP B:203 , GLU B:204 , HIS B:294 , CAP B:490 , FMT B:492BINDING SITE FOR RESIDUE MG B 491
03AC3SOFTWAREASP C:203 , GLU C:204 , HIS C:294 , CAP C:490 , FMT C:492BINDING SITE FOR RESIDUE MG C 491
04AC4SOFTWAREASP D:203 , GLU D:204 , HIS D:294 , CAP D:490 , FMT D:492BINDING SITE FOR RESIDUE MG D 491
05AC5SOFTWARETHR A:173 , LYS A:175 , ASP A:203 , GLU A:204 , HIS A:294 , ARG A:295 , HIS A:327 , LYS A:334 , LEU A:335 , SER A:379 , GLY A:380 , GLY A:381 , GLY A:403 , GLY A:404 , MG A:491 , FMT A:492 , THR D:65 , TRP D:66 , ASN D:123BINDING SITE FOR RESIDUE CAP A 490
06AC6SOFTWARETHR B:173 , LYS B:175 , ASP B:203 , GLU B:204 , HIS B:294 , ARG B:295 , HIS B:327 , LYS B:334 , LEU B:335 , SER B:379 , GLY B:380 , GLY B:381 , GLY B:403 , GLY B:404 , MG B:491 , FMT B:492 , THR C:65 , TRP C:66 , ASN C:123BINDING SITE FOR RESIDUE CAP B 490
07AC7SOFTWARETHR B:65 , ASN B:123 , THR C:173 , LYS C:175 , LYS C:177 , ASP C:203 , GLU C:204 , HIS C:294 , ARG C:295 , HIS C:327 , LYS C:334 , LEU C:335 , SER C:379 , GLY C:380 , GLY C:381 , GLY C:403 , GLY C:404 , MG C:491 , FMT C:492BINDING SITE FOR RESIDUE CAP C 490
08AC8SOFTWARETHR A:65 , TRP A:66 , ASN A:123 , THR D:173 , LYS D:175 , ASP D:203 , GLU D:204 , HIS D:294 , ARG D:295 , HIS D:327 , LYS D:334 , LEU D:335 , SER D:379 , GLY D:380 , GLY D:381 , GLY D:403 , GLY D:404 , MG D:491 , FMT D:492BINDING SITE FOR RESIDUE CAP D 490
09AC9SOFTWARETHR A:173 , LYS A:201 , ASP A:202 , ASP A:203 , GLU A:204 , HIS A:294 , HIS A:327 , CAP A:490 , MG A:491BINDING SITE FOR RESIDUE FMT A 492
10BC1SOFTWARETHR B:173 , LYS B:201 , ASP B:202 , ASP B:203 , GLU B:204 , HIS B:294 , HIS B:327 , CAP B:490 , MG B:491BINDING SITE FOR RESIDUE FMT B 492
11BC2SOFTWARETHR C:173 , LYS C:201 , ASP C:202 , ASP C:203 , GLU C:204 , HIS C:294 , HIS C:327 , CAP C:490 , MG C:491BINDING SITE FOR RESIDUE FMT C 492
12BC3SOFTWARETHR D:173 , LYS D:201 , ASP D:202 , ASP D:203 , GLU D:204 , HIS D:294 , HIS D:327 , CAP D:490 , MG D:491BINDING SITE FOR RESIDUE FMT D 492
13CTAAUTHORLYS A:175 , LYS A:177 , LYS A:201 , ASP A:203 , GLU A:204 , HIS A:294 , ARG A:295 , HIS A:298 , HIS A:327 , SER A:379 , FMT A:492 , CAP A:490 , MG A:491catalytic site
14CTBAUTHORLYS B:175 , LYS B:177 , LYS B:201 , ASP B:203 , GLU B:204 , HIS B:294 , ARG B:295 , HIS B:298 , HIS B:327 , SER B:379 , FMT B:492 , CAP B:490 , MG B:491catalytic site
15CTCAUTHORLYS C:175 , LYS C:177 , LYS C:201 , ASP C:203 , GLU C:204 , HIS C:294 , ARG C:295 , HIS C:298 , HIS C:327 , SER C:379 , FMT C:492 , CAP C:490 , MG C:491catalytic site
16CTDAUTHORLYS D:175 , LYS D:177 , LYS D:201 , ASP D:203 , GLU D:204 , HIS D:294 , ARG D:295 , HIS D:298 , HIS D:327 , SER D:379 , FMT D:492 , CAP D:490 , MG D:491catalytic site

(-) SS Bonds  (6, 6)

Asymmetric Unit
No.Residues
1A:247 -D:247
2A:449 -A:459
3B:247 -C:247
4B:449 -B:459
5C:449 -C:459
6D:449 -D:459

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Lys A:175 -Pro A:176
2Lys B:175 -Pro B:176
3Lys C:175 -Pro C:176
4Lys D:175 -Pro D:176

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RUB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RUB)

(-) Exons   (0, 0)

(no "Exon" information available for 4RUB)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:465
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains d4ruba2 A:9-147 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                            d4ruba1 A:148-473 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains -------------4rubA01 A:22-148  [code=3.30.70.150, no name defined]                                                                          4rubA02 A:149-467 Rubisco                                                                                                                                                                                                                                                                                                      ------ CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........................eeeeeeeee.....hhhhhhhhhh.......................eeeeeee.......eeeeeee.........hhhhhhhhh........eeeeeeeeee..hhhh.........hhhhhhhh...................hhhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhh........hhhh.hhhhhhhhhhhhhh..........hhhhh........hhhhhhhhhhh..............hhhhhhhhhhhhhhh....................................hhhhhhhh..................hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rub A   9 ASVGFKAGVKEYKLTYYTPEYQTKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYRIERVVGEKDQYIAYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEALYKAQAETGEIKGHYLNATAGTCEEMIKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGDHIHSGTVVGKLEGERDITLGFVDLLRDDFVEQDRSRGIYFTQDWVSLPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVKARNEGRDLAQEGNEIIREACKWSPELAAACEVWKEIVFNFAAVD 473
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468     


Chain B from PDB  Type:PROTEIN  Length:465
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains d4rubb2 B:9-147 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                            d4rubb1 B:148-473 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains -------------4rubB01 B:22-148  [code=3.30.70.150, no name defined]                                                                          4rubB02 B:149-467 Rubisco                                                                                                                                                                                                                                                                                                      ------ CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........................eeeeeeeee.....hhhhhhhhhh.......................eeeeeee.......eeeeeee.........hhhhhhhhh........eeeeeeeeee..hhhh.........hhhhhhhh...................hhhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhh........hhhh.hhhhhhhhhhhhhh..........hhhhh........hhhhhhhhhhh..............hhhhhhhhhhhhhhh....................................hhhhhhhh..................hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rub B   9 ASVGFKAGVKEYKLTYYTPEYQTKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYRIERVVGEKDQYIAYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEALYKAQAETGEIKGHYLNATAGTCEEMIKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGDHIHSGTVVGKLEGERDITLGFVDLLRDDFVEQDRSRGIYFTQDWVSLPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVKARNEGRDLAQEGNEIIREACKWSPELAAACEVWKEIVFNFAAVD 473
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468     


Chain C from PDB  Type:PROTEIN  Length:465
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains d4rubc2 C:9-147 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                            d4rubc1 C:148-473 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains -------------4rubC01 C:22-148  [code=3.30.70.150, no name defined]                                                                          4rubC02 C:149-467 Rubisco                                                                                                                                                                                                                                                                                                      ------ CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........................eeeeeeeee.....hhhhhhhhhh.......................eeeeeee.......eeeeeee.........hhhhhhhhh........eeeeeeeeee..hhhh.........hhhhhhhh...................hhhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhh........hhhh.hhhhhhhhhhhhhh..........hhhhh........hhhhhhhhhhh..............hhhhhhhhhhhhhhh....................................hhhhhhhh..................hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rub C   9 ASVGFKAGVKEYKLTYYTPEYQTKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYRIERVVGEKDQYIAYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEALYKAQAETGEIKGHYLNATAGTCEEMIKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGDHIHSGTVVGKLEGERDITLGFVDLLRDDFVEQDRSRGIYFTQDWVSLPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVKARNEGRDLAQEGNEIIREACKWSPELAAACEVWKEIVFNFAAVD 473
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468     


Chain D from PDB  Type:PROTEIN  Length:465
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains d4rubd2 D:9-147 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                            d4rubd1 D:148-473 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains -------------4rubD01 D:22-148  [code=3.30.70.150, no name defined]                                                                          4rubD02 D:149-467 Rubisco                                                                                                                                                                                                                                                                                                      ------ CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........................eeeeeeeee.....hhhhhhhhhh.......................eeeeeee.......eeeeeee.........hhhhhhhhh........eeeeeeeeee..hhhh.........hhhhhhhh...................hhhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhh........hhhh.hhhhhhhhhhhhhh..........hhhhh........hhhhhhhhhhh..............hhhhhhhhhhhhhhh....................................hhhhhhhh..................hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rub D   9 ASVGFKAGVKEYKLTYYTPEYQTKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYRIERVVGEKDQYIAYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEALYKAQAETGEIKGHYLNATAGTCEEMIKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGDHIHSGTVVGKLEGERDITLGFVDLLRDDFVEQDRSRGIYFTQDWVSLPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVKARNEGRDLAQEGNEIIREACKWSPELAAACEVWKEIVFNFAAVD 473
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468     


Chain S from PDB  Type:PROTEIN  Length:123
                                                                                                                                                           
               SCOP domains d4rubs_ S: Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                  SCOP domains
               CATH domains 4rubS00 S:1-123  [code=3.30.190.10, no name defined]                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......................hhhhhhhhhhhhh...eeeeeee......................eee.........hhhhhhhhhhhhhh....eeeeeeee....eeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rub S   1 MQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVGEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEGY 123
                                    10        20        30        40        50        60        70        80        90       100       110       120   


Chain T from PDB  Type:PROTEIN  Length:123
                                                                                                                                                           
               SCOP domains d4rubt_ T: Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                  SCOP domains
               CATH domains 4rubT00 T:1-123  [code=3.30.190.10, no name defined]                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......................hhhhhhhhhhhhh...eeeeeee......................eee.........hhhhhhhhhhhhhh....eeeeeeee....eeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rub T   1 MQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVGEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEGY 123
                                    10        20        30        40        50        60        70        80        90       100       110       120   


Chain U from PDB  Type:PROTEIN  Length:123
                                                                                                                                                           
               SCOP domains d4rubu_ U: Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                  SCOP domains
               CATH domains 4rubU00 U:1-123  [code=3.30.190.10, no name defined]                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......................hhhhhhhhhhhhh...eeeeeee......................eee.........hhhhhhhhhhhhhh....eeeeeeee....eeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rub U   1 MQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVGEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEGY 123
                                    10        20        30        40        50        60        70        80        90       100       110       120   


Chain V from PDB  Type:PROTEIN  Length:123
                                                                                                                                                           
               SCOP domains d4rubv_ V: Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                  SCOP domains
               CATH domains 4rubV00 V:1-123  [code=3.30.190.10, no name defined]                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......................hhhhhhhhhhhhh...eeeeeee......................eee.........hhhhhhhhhhhhhh....eeeeeeee....eeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rub V   1 MQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVGEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEGY 123
                                    10        20        30        40        50        60        70        80        90       100       110       120
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 12)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (3, 12)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RUB)

(-) Gene Ontology  (14, 24)

Asymmetric Unit(hide GO term definitions)

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  4rub
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    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  RBL_TOBAC | P00876
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  RBS_TOBAC | P69249
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  4.1.1.39
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
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  (no 'MIM ID' available)
    Disease Information: OMIM
 
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    Age Related Information: GenAge

(-) Analysis Tools

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    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
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Access by UniProt ID/Accession number
  RBL_TOBAC | P00876
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  RBS_TOBAC | P69249
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RBL_TOBAC | P00876: 1ej7 1rlc 1rld 3rub
        RBS_TOBAC | P69249: 1ej7 1rlc 1rld 3rub

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4RUB)