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(-) Description

Title :  THE CRYSTAL STRUCTURE OF ABC TRANSPORTER PERMEASE FROM PSEUDOMONAS FLUORESCENS GROUP
 
Authors :  R. Wu, M. Endres, A. Joachimiak, Midwest Center For Structural Gen (Mcsg)
Date :  17 Nov 14  (Deposition) - 26 Nov 14  (Release) - 26 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.44
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Abc Transporter Permease, Structural Genomics, Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Alpha/Beta Fold, Solute Binding Protein, Solute, Extracellular, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Wu, M. Endres, A. Joachimiak
The Crystal Structure Of Abc Transporter Permease From Pseudomonas Fluorescens Group
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE BRANCHED-CHAIN AMINO ACID ABC TRANSPORTER, PERIPLASMIC BRANCHED-CHAIN AMINO ACID-BINDING PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: MCSG73
    Expression System Strain: BL21(DE3)MAGIC
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES (27-444)
    Gene: PFL_2622
    Organism Scientific: PSEUDOMONAS PROTEGENS PF-5
    Organism Taxid: 220664
    Strain: PF-5

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 15)

Asymmetric Unit (3, 15)
No.NameCountTypeFull Name
1GOL5Ligand/IonGLYCEROL
2MSE8Mod. Amino AcidSELENOMETHIONINE
3P3G2Ligand/Ion3,6,9,12,15-PENTAOXAHEPTADECANE
Biological Unit 1 (3, 8)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2MSE4Mod. Amino AcidSELENOMETHIONINE
3P3G1Ligand/Ion3,6,9,12,15-PENTAOXAHEPTADECANE
Biological Unit 2 (3, 7)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2MSE4Mod. Amino AcidSELENOMETHIONINE
3P3G1Ligand/Ion3,6,9,12,15-PENTAOXAHEPTADECANE

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:38 , TYR A:189 , TRP A:240BINDING SITE FOR RESIDUE P3G A 501
2AC2SOFTWARETYR A:115 , ARG A:135 , LYS A:433BINDING SITE FOR RESIDUE GOL A 502
3AC3SOFTWAREARG A:438 , HOH A:718 , HOH A:719 , ARG B:356 , ARG B:438 , THR B:439BINDING SITE FOR RESIDUE GOL A 503
4AC4SOFTWAREGLN A:379 , ASN A:380 , TRP A:410 , HOH A:625 , HOH A:707BINDING SITE FOR RESIDUE GOL A 504
5AC5SOFTWARETYR B:189 , TRP B:266BINDING SITE FOR RESIDUE P3G B 501
6AC6SOFTWAREGLN B:379 , ASN B:380 , TRP B:410BINDING SITE FOR RESIDUE GOL B 502
7AC7SOFTWARETYR B:115 , ALA B:188BINDING SITE FOR RESIDUE GOL B 503

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:78 -A:90
2A:385 -A:440
3B:78 -B:90
4B:385 -B:440

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Asp A:215 -Pro A:216
2Asp B:215 -Pro B:216

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RU0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RU0)

(-) Exons   (0, 0)

(no "Exon" information available for 4RU0)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:415
                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee.....hhhhhhhhhhhhhhhhhhhhhhh.......eeeeeee...hhhhhhhhhhhhh..............hhhhhhhhhhhhhhh...ee.....hhhhhh......ee....hhhhhhhhhhhhhhhhhhhhhhhh..eeeeeee.hhhhhhhhhhhhhhhhhhh.eeeeeee......hhhhhhhhhhhh..eeeee...hhhhhhhhhhhhh..hhh.eee.hhhhhhhhhhhhhhhhh..eeee.......hhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhh.eehhhhhhhhh.......ee..........eeeeeee....eee....ee.hhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ru0 A  27 GPDQQFFPLATYRVGAYASSGVQVWAGmIDYLNYINQVEGGINGVKLVWQECETEWTAEKGIECYERFKNGLDGAPVAVYQPNGAPAAYALSERAEVDKIPLITLGYGRTEATDGTVFPYNFPVmLTFYSEASTLVNYIAQREGGFDRLKGKKIATLYHDSAYGRETLGPLKLLAEKYGFENIQIPVADPGNEQSAQWRQIRQQNPDWVFLRTWGVSTPVAVKTAARFGFPVDHIIGDIWASSSEDVLPAGAAAKGYLALTPYPAGSDFEIHKRLKQYILDTGKSDLKDLKNFGSVYYNSGLVNAAVAVEAIRTAQGKFGKRPLNGEEGRWGLEHLNIDDARLKDmGYLGLmQNLKLSCRDHEGGGAARVQQWDGANWTLISEWIAADRALLRPLIDEKAAAFAKEKRLVPRTCN 441
                                    36        46       |56        66        76        86        96       106       116       126       136       146    |  156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366     | 376 |     386       396       406       416       426       436     
                                                      54-MSE                                                                                          151-MSE                                                                                                                                                                                                                      372-MSE |                                                               
                                                                                                                                                                                                                                                                                                                                                                                         378-MSE                                                           


Chain B from PDB  Type:PROTEIN  Length:415
                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee.....hhhhhhhhhhhhhhhhhhhhhh........eeeeeee...hhhhhhhhhhhhh..............hhhhhhhhhhhhhhh...ee.....hhhhhh......ee....hhhhhhhhhhhhhhhhhhhhhhhh..eeeeeee.hhhhhhhhhhhhhhhhhhh.eeeeeee......hhhhhhhhhhhh..eeeee...hhhhhhhhhhhhh..hhh.eee.hhhhhhhhhhhhhhhhh..eeee.........hhhhhhhhh.........hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhh.eehhhhhhhhh.......ee..........eeeeeee....eee....ee.hhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ru0 B  27 GPDQQFFPLATYRVGAYASSGVQVWAGmIDYLNYINQVEGGINGVKLVWQECETEWTAEKGIECYERFKNGLDGAPVAVYQPNGAPAAYALSERAEVDKIPLITLGYGRTEATDGTVFPYNFPVmLTFYSEASTLVNYIAQREGGFDRLKGKKIATLYHDSAYGRETLGPLKLLAEKYGFENIQIPVADPGNEQSAQWRQIRQQNPDWVFLRTWGVSTPVAVKTAARFGFPVDHIIGDIWASSSEDVLPAGAAAKGYLALTPYPAGSDFEIHKRLKQYILDTGKSDLKDLKNFGSVYYNSGLVNAAVAVEAIRTAQGKFGKRPLNGEEGRWGLEHLNIDDARLKDmGYLGLmQNLKLSCRDHEGGGAARVQQWDGANWTLISEWIAADRALLRPLIDEKAAAFAKEKRLVPRTCN 441
                                    36        46       |56        66        76        86        96       106       116       126       136       146    |  156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366     | 376 |     386       396       406       416       426       436     
                                                      54-MSE                                                                                          151-MSE                                                                                                                                                                                                                      372-MSE |                                                               
                                                                                                                                                                                                                                                                                                                                                                                         378-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RU0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RU0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RU0)

(-) Gene Ontology  (3, 3)

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