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(-) Description

Title :  STRUCTURE OF A PUTATIVE LIPOLYTIC PROTEIN OF G-D-S-L FAMILY FROM DESULFITOBACTERIUM HAFNIENSE DCB-2
 
Authors :  E. V. Filippova, Z. Wawrzak, G. Minasov, O. Kiryukhina, M. Endres, A. Jo W. F. Anderson, Midwest Center For Structural Genomics (Mcsg)
Date :  07 Nov 14  (Deposition) - 19 Nov 14  (Release) - 19 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.19
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Structural Genomics, Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. V. Filippova, Z. Wawrzak, G. Minasov, O. Kiryukhina, M. Endres, A. Joachimiak, W. F. Anderson
Structure Of A Putative Lipolytic Protein Of G-D-S-L Family From Desulfitobacterium Hafniense Dcb-2
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - LIPOLYTIC PROTEIN G-D-S-L FAMILY
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG68
    Expression System Strain: BL-21 (DE3) MAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 53-228
    Gene: ACL22416, DHAF_4411
    Organism Scientific: DESULFITOBACTERIUM HAFNIENSE DCB-2
    Organism Taxid: 272564
    Strain: DCB-2

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 11)

Asymmetric Unit (2, 11)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
2MSE9Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 3)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MSE3Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP B:61 , SER B:62BINDING SITE FOR RESIDUE CL B 301
2AC2SOFTWAREASP C:61 , SER C:62 , GLY C:123BINDING SITE FOR RESIDUE CL C 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4RSH)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Tyr A:67 -Pro A:68
2Tyr B:67 -Pro B:68
3Tyr C:67 -Pro C:68

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RSH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RSH)

(-) Exons   (0, 0)

(no "Exon" information available for 4RSH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:175
                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeehhhhhh...hhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhh..eeeee.hhhhhhh..hhhhhhhhhhhhhhhhhhh..eeeee.......hhhhhhhhhhhhhhhhhhh..eee.hhhhhh..................hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rsh A  53 NTKVVAIGDSFTFGYPGNTENSWPAVLGQTSQIEVVNKGLKSQTAQDLYSRFDADVLAEKPGRVIIFVGNGDAIKEVPLETFQQHIKAmVEKAESNHIIPILALPLPYTGVQNTIKEFREWESSYAKEKNILVLDFATVLmDADNVYLEGLLSKEANYPSKEGYKLmGEYASRVL 227
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192|      202       212      |222     
                                                                                                                  141-MSE                                             193-MSE                   219-MSE    


Chain B from PDB  Type:PROTEIN  Length:175
                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeehhhhhh...hhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhh......eeeee.hhhhhhh..hhhhhhhhhhhhhhhhhhh..eeeee.......hhhhhhhhhhhhhhhhhhhh..ee.hhhhhh..................hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rsh B  53 NTKVVAIGDSFTFGYPGNTENSWPAVLGQTSQIEVVNKGLKSQTAQDLYSRFDADVLAEKPGRVIIFVGNGDAIKEVPLETFQQHIKAmVEKAESNHIIPILALPLPYTGVQNTIKEFREWESSYAKEKNILVLDFATVLmDADNVYLEGLLSKEANYPSKEGYKLmGEYASRVL 227
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192|      202       212      |222     
                                                                                                                  141-MSE                                             193-MSE                   219-MSE    


Chain C from PDB  Type:PROTEIN  Length:175
                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeehhhhhh...hhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhh..eeeee.hhhhhhh..hhhhhhhhhhhhhhhhhhh..eeeee.......hhhhhhhhhhhhhhhhhhhh..ee.hhhhhh..................hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rsh C  53 NTKVVAIGDSFTFGYPGNTENSWPAVLGQTSQIEVVNKGLKSQTAQDLYSRFDADVLAEKPGRVIIFVGNGDAIKEVPLETFQQHIKAmVEKAESNHIIPILALPLPYTGVQNTIKEFREWESSYAKEKNILVLDFATVLmDADNVYLEGLLSKEANYPSKEGYKLmGEYASRVL 227
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192|      202       212      |222     
                                                                                                                  141-MSE                                             193-MSE                   219-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RSH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RSH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RSH)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)

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