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(-) Description

Title :  STRUCTURE OF THE PNOB8-LIKE PARB N-DOMAIN
 
Authors :  M. Schumacher
Date :  23 May 16  (Deposition) - 15 Jun 16  (Release) - 15 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.83
Chains :  Asym./Biol. Unit :  B
Keywords :  Parb, Pnob8, Partition, Dna Segregation, Archaea, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. A. Schumacher, N. K. Tonthat, J. Lee, F. A. Rodriguez-Castaneda, N. B. Chinnam, A. K. Kalliomaa-Sanford, I. W. Ng, M. T. Barge, P. L. Shaw D. Barilla
Structures Of Archaeal Dna Segregation Machinery Reveal Bacterial And Eukaryotic Linkages.
Science V. 349 1120 2015
PubMed-ID: 26339031  |  Reference-DOI: 10.1126/SCIENCE.AAA9046

(-) Compounds

Molecule 1 - PARB DOMAIN PROTEIN NUCLEASE
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 2-287
    Gene: SSOL_1539
    Organism Scientific: SULFOLOBUS SOLFATARICUS
    Organism Taxid: 555311
    Strain: 98/2

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric/Biological Unit (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 5K5A)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5K5A)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5K5A)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5K5A)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5K5A)

(-) Exons   (0, 0)

(no "Exon" information available for 5K5A)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain B from PDB  Type:PROTEIN  Length:268
                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeeee......hhhhhhhh...hhhhhhhhhhh......eee.....eeehhhhhhhhh.....eeeeeee......hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhheee.....eeehhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh.hhhhhhh.hhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.hhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k5a B   2 GSHmTELTYTEEVVSIEKLKEDDEFKTLVPSNNSREDLEKSLREKQIFPLIADRDYVLIDGYTRLDImKKLGFKEVKILKYDFDSQQERDKAYELIWTFNGVRRQLNKNERLALFQKIADRIAKIQASKNKTEQIEENEEFVTLDDGTTISALEYERILKELDKENKALSESDKRKmAILRINTPWLLKYVTDQKYKVPLDQAFRIYTRVKDLGILDKLKDLAPALRDPLITTREGRKIILNDEYRDLLEKIITTERAISVKQKEALK 291
                               |    11        21        31        41    ||  52        62       |72        82        92       102       112       122       132  ||   159       169       179       189      |199       209       219       229       239       249       259       269  ||   283        
                               |                                       46|                    70-MSE                                                          135|                                        196-MSE                                                                     272|              
                               5-MSE                                    48                                                                                     153                                                                                                                     277
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5K5A)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5K5A)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5K5A)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5K5A)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        D0KSP7_SULS9 | D0KSP7: 5k5d

(-) Related Entries Specified in the PDB File

5k5d