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(-) Description

Title :  CRYSTAL STRUCTURE AND MUTATIONAL ANALYSIS OF THE ENDORIBONUCLEASE FROM HUMAN CORONAVIRUS 229E
 
Authors :  T. Huo, X. Liu, C. Yang, Z. Rao
Date :  06 Nov 14  (Deposition) - 11 Nov 15  (Release) - 11 Nov 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.96
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Endoribonuclease, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Huo, X. Liu, C. Yang, Z. Rao
Crystal Structure And Mutational Analysis Of The Endoribonuclease From Human Coronavirus 229E
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - URIDYLATE-SPECIFIC ENDORIBONUCLEASE
    Chains: A, B, C, D, E, F
    EC Number: 3.1.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: REP, 1A-1B
    Mutation: YES
    Organism Common: HCOV-229E
    Organism Scientific: HUMAN CORONAVIRUS 229E
    Organism Taxid: 11137
    Synonym: NENDOU, NSP15, P41

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4RS4)

(-) Sites  (0, 0)

(no "Site" information available for 4RS4)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4RS4)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Ala A:142 -Gly A:143
2Ala B:142 -Gly B:143
3Asp D:192 -Gly D:193

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RS4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RS4)

(-) Exons   (0, 0)

(no "Exon" information available for 4RS4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:341
                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh..........eeee..eeeeee..eeeeeee.....hhhhhhhhhhh....ee.hhhhhhhh...eee....ee....ee...eee.............eeee....hhhhhhhh...eeeee.............eee.eeee..eeee.......eeeeeee..ee....................hhhhhhhhhh...hhhhhh.....hhhhhh.............hhhhhhhhhhhh.eeeee.........eeeeeee....eeeeeeee...hhhhhhhhhh........eeeeeee..eeeeeee.........eee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rs4 A   0 SGLENIAFNVVNKGSFVSADGELPVAISGDKVFVRDGNTDNLVFVNKTSLPTNIAFELFAKRKVGLTPPLSILKNLGVVATYKFVLWDYEAERPLTSFTKSVCGYTDFAEDVCTCYDNSIQGSYERFTLSTNAVLFSATAVKAGGKSLPAIKLNFGMLNGNAIATVIKNINWFVYVRKDGKPVDHYDGFYTQGRNLQDFLPRSTMEEDFLNMDMGVFIQKYGLEDFNFEHVVYGDVSKTTLGGLHLSISQVRLSKMGILKAEEFVAASDITLKCCTVTYLNDPSSKTVCTYMDLLLDDFVSVLKSLDLTVVSKVHEVIIDNKPWRWMLWCKDNAVATFYPQ 346
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159     ||175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345 
                                                                                                                                                                                               165|                                                                                                                                                                              
                                                                                                                                                                                                172                                                                                                                                                                              


Chain B from PDB  Type:PROTEIN  Length:345
                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh..........eeee..eeeeee..eeeeeee.....hhhhhhhhhhh....ee.hhhhhhhh...eee....ee....ee....ee.............eeee....hhhhhhhh...eeeee.............eee.eeee..eeee...........eeeeeee..ee....................hhhhhhhhhh..hhhhhhh........................hhhhhhhhhh...eeeee.........eeeeeee....eeeeeeee...hhhhhhhhhhh......eeeeeeee..eeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rs4 B   0 SGLENIAFNVVNKGSFVSADGELPVAISGDKVFVRDGNTDNLVFVNKTSLPTNIAFELFAKRKVGLTPPLSILKNLGVVATYKFVLWDYEAERPLTSFTKSVCGYTDFAEDVCTCYDNSIQGSYERFTLSTNAVLFSATAVKAGGKSLPAIKLNFGMLNGNAIATVKDGNIKNINWFVYVRKDGKPVDHYDGFYTQGRNLQDFLPRSTMEEDFLNMDMGVFIQKYGLEDFNFEHVVYGDVSKTTLGGLHLSISQVRLSKMGILKAEEFVAASDITLKCCTVTYLNDPSSKTVCTYMDLLLDDFVSVLKSLDLTVVSKVHEVIIDNKPWRWMLWCKDNAVATFYPQ 346
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159      |171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341     
                                                                                                                                                                                                166|                                                                                                                                                                                 
                                                                                                                                                                                                 169                                                                                                                                                                                 


Chain C from PDB  Type:PROTEIN  Length:332
                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh..........eeee..eeeeee..eeeeeee.....hhhhhhhhhhh....ee.hhhhhhhh...eee....ee....ee...eee.............eeee....hhhhhhhh...eeeee........ee.eeee..eeee.......eeeeeee..ee...................hhhhhhhhhhhhhhhhhhh.....hhhhhh.............hhhhhhhhh....eeeee.........eeeeeee....eee...ee...hhhhhhhhhh.......eeeeeeee..eeeeeeee.....eeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rs4 C   0 SGLENIAFNVVNKGSFVSADGELPVAISGDKVFVRDGNTDNLVFVNKTSLPTNIAFELFAKRKVGLTPPLSILKNLGVVATYKFVLWDYEAERPLTSFTKSVCGYTDFAEDVCTCYDNSIQGSYERFTLSTNAVLFSATAVLPAIKLNFGMLNGNAIATVIKNINWFVYVRKDGKPVDHDGFYTQGRNLQDFLPRSTMEEDFLNMDMGVFIQKYGLEDFNFEHVVYGDVSKTTLGGLHLSISQVRLSKMGILKAEEFVAASDITLKCCTVTYLNDPSSKTVCTYMDLLLDDFVSVLKSLDLTVVSKVHEVIIDNKPWRWMLWCKDVATFYPQ 346
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139||     155       165|      181       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332    || 344  
                                                                                                                                                                      140|               165|               190|                                                                                                                                              337|      
                                                                                                                                                                       147                172                192                                                                                                                                               340      


Chain D from PDB  Type:PROTEIN  Length:337
                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh..........eeee..eeeeee..eeeeeee.....hhhhhhhhhhh....ee.hhhhhhhh...eee....ee....ee...eee.............eeee....hhhhhhhh...eeeee.............eee.eeee..eeee.......eeeeeee..ee....................hhhhhhhhhhhhhhhhhhhh.......................hhhhhhhhh....eeeee.........eeeeeee.....eeeeeee...hhhhhhhhhhh......eeeeeeee..eeeeeeee....eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rs4 D   0 SGLENIAFNVVNKGSFVSADGELPVAISGDKVFVRDGNTDNLVFVNKTSLPTNIAFELFAKRKVGLTPPLSILKNLGVVATYKFVLWDYEAERPLTSFTKSVCGYTDFAEDVCTCYDNSIQGSYERFTLSTNAVLFSATAVKAGGKSLPAIKLNFGMLNGNAIATVIKNINWFVYVRKDGKPVDHYDGFYTQGRNLQDFLPRSTMEEDFLNMDMGVFIQKYGLEDFNFEHVVYGDVSKTTLGGLHLSISQVRLSKMGILKAEEFVAASDITLKCCTVTYLNDPSSKTVCTYMDLLLDDFVSVLKSLDLTVVSKVHEVIIDNKPWRWMLWCVATFYPQ 346
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159     ||175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335|      
                                                                                                                                                                                               165|                                                                                                                                                                335|      
                                                                                                                                                                                                172                                                                                                                                                                 340      


Chain E from PDB  Type:PROTEIN  Length:341
                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh..........eeee..eeeeee..eeeeeee.....hhhhhhhhhhh....ee.hhhhhhhh...eee....ee....ee...eee.............eeee....hhhhhhhhh..eeeee.............eee.eeee..eeee.......eeeeeee..ee....................hhhhhhhhhh...hhhhhh.....hhhhhh.............hhhhhhhhhhhh.eeeee.........eeeeeee....eeeeeeee...hhhhhhhhhh.......eeeeeeee..eeeeeeeeee..eeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rs4 E   0 SGLENIAFNVVNKGSFVSADGELPVAISGDKVFVRDGNTDNLVFVNKTSLPTNIAFELFAKRKVGLTPPLSILKNLGVVATYKFVLWDYEAERPLTSFTKSVCGYTDFAEDVCTCYDNSIQGSYERFTLSTNAVLFSATAVKAGGKSLPAIKLNFGMLNGNAIATVIKNINWFVYVRKDGKPVDHYDGFYTQGRNLQDFLPRSTMEEDFLNMDMGVFIQKYGLEDFNFEHVVYGDVSKTTLGGLHLSISQVRLSKMGILKAEEFVAASDITLKCCTVTYLNDPSSKTVCTYMDLLLDDFVSVLKSLDLTVVSKVHEVIIDNKPWRWMLWCKDNAVATFYPQ 346
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159     ||175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345 
                                                                                                                                                                                               165|                                                                                                                                                                              
                                                                                                                                                                                                172                                                                                                                                                                              


Chain F from PDB  Type:PROTEIN  Length:346
                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh..........eeee..eeeeee..eeeeeee.....hhhhhhhhhhh....ee.hhhhhhhh...eee....ee....ee...eee.............eeee....hhhhhhhh...eeeee....ee..ee...eee.eeee..eeee............eeeeeee..ee....................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhh.eeeee.........eeeeeee....eeeeeeee...hhhhhhhhhh.......eeeeeeee..eeeeeeeeee..eeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rs4 F   0 SGLENIAFNVVNKGSFVSADGELPVAISGDKVFVRDGNTDNLVFVNKTSLPTNIAFELFAKRKVGLTPPLSILKNLGVVATYKFVLWDYEAERPLTSFTKSVCGYTDFAEDVCTCYDNSIQGSYERFTLSTNAVLFSATAVKAGGKSLPAIKLNFGMLNGNAIATVKSEDNIKNINWFVYVRKDGKPVDHYDGFYTQGRNLQDFLPRSTMEEDFLNMDMGVFIQKYGLEDFNFEHVVYGDVSKTTLGGLHLSISQVRLSKMGILKAEEFVAASDITLKCCTVTYLNDPSSKTVCTYMDLLLDDFVSVLKSLDLTVVSKVHEVIIDNKPWRWMLWCKDNAVATFYPQ 346
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169|      180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340      
                                                                                                                                                                                                   169|                                                                                                                                                                               
                                                                                                                                                                                                    171
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RS4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RS4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RS4)

(-) Gene Ontology  (41, 41)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:142 - Gly A:143   [ RasMol ]  
    Ala B:142 - Gly B:143   [ RasMol ]  
    Asp D:192 - Gly D:193   [ RasMol ]  
 

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        R1AB_CVH22 | P0C6X1: 1p9s 2j97 2j98 3ejg 4s1t

(-) Related Entries Specified in the PDB File

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