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(-) Description

Title :  CRYSTAL STRUCTURE OF A HYPOXANTHINE PHOSPHORIBOSYLTRANSFERASE (TARGET ID NYSGRC-029686) FROM STAPHYLOCOCCUS AUREUS (ORTHORHOMBIC SPACE GROUP)
 
Authors :  A. Ghosh, S. C. Almo, New York Structural Genomics Research Conso (Nysgrc)
Date :  31 Oct 14  (Deposition) - 26 Nov 14  (Release) - 26 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.48
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (4x)
Keywords :  Prtase, Nysgrc, Structural Genomics, Psi-Biology, New York Structural Genomics Research Consortium, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Ghosh, A. Ahmed, R. Bhoshle, R. Seidel, M. Stead, R. Toro, V. L. Schramm, S. C. Almo, New York Structural Genomics Research Consortium (Nysgrc)
Crystal Structure Of A Hypoxanthine Phosphoribosyltransferase (Target Id Nysgrc-029686) From Staphylococcus Aureus (Orthorhombic Space Group)
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOXANTHINE PHOSPHORIBOSYLTRANSFERASE
    Chains: A
    EC Number: 2.4.2.8
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PSGC-HIS
    Expression System Strain: BL21(DE3) PRIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: HPT
    Organism Scientific: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS
    Organism Taxid: 451516
    Strain: USA300_TCH1516

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 12)

Asymmetric Unit (5, 12)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2CL3Ligand/IonCHLORIDE ION
3GOL2Ligand/IonGLYCEROL
4MSE5Mod. Amino AcidSELENOMETHIONINE
5NA1Ligand/IonSODIUM ION
Biological Unit 1 (3, 8)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2CL-1Ligand/IonCHLORIDE ION
3GOL2Ligand/IonGLYCEROL
4MSE5Mod. Amino AcidSELENOMETHIONINE
5NA-1Ligand/IonSODIUM ION
Biological Unit 2 (3, 32)
No.NameCountTypeFull Name
1ACT4Ligand/IonACETATE ION
2CL-1Ligand/IonCHLORIDE ION
3GOL8Ligand/IonGLYCEROL
4MSE20Mod. Amino AcidSELENOMETHIONINE
5NA-1Ligand/IonSODIUM ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:18 , GLN A:22 , ASP A:56 , LYS A:59 , ARG A:60BINDING SITE FOR RESIDUE GOL A 201
2AC2SOFTWARELEU A:28 , VAL A:149 , GLY A:150BINDING SITE FOR RESIDUE GOL A 202
3AC3SOFTWARESER A:55 , ASP A:56 , CL A:207BINDING SITE FOR RESIDUE NA A 203
4AC4SOFTWARELYS A:48 , GLY A:49 , ARG A:170 , HOH A:324 , HOH A:327 , HOH A:413BINDING SITE FOR RESIDUE ACT A 204
5AC5SOFTWAREGLU A:108 , LYS A:136 , VAL A:158BINDING SITE FOR RESIDUE CL A 205
6AC6SOFTWAREPRO A:40 , LEU A:41 , SER A:66 , LYS A:98BINDING SITE FOR RESIDUE CL A 206
7AC7SOFTWAREMSE A:52 , SER A:55 , ASP A:56 , LYS A:59 , NA A:203BINDING SITE FOR RESIDUE CL A 207

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4RQA)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Leu A:47 -Lys A:48

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:176
                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhh.eeeeeehhhhhhhhhhhhhhhhhhhhh...eeeeee..hhhhhhhhhhh.....eeeeeeeeee.....eeeee.........eeeeeeeee..hhhhhhhhhhhhh....eeeeeeeee.hhhh.......eeeee.....ee...............eeee.hhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rqa A   3 mNSVmHNDLKEVLLTEEDIQNICKELGAQLTKDYQGKPLVCVGILKGSAmFmSDLIKRIDTHLSIDFmDVSSYSTGEVQIIKDLGSSIENKDVLIIEDILETGTTLKSITELLQSRKVNSLEIVTLLDKPNRRKADIEAKYVGKKIPDEFVVGYGLDYRELYRNLPYIGTLKPEVY 183
                            |   |   12        22        32        42        52 |      62       |72  ||    87        97       107       117       127       137       147       157       167       177      
                            |   |                                           52-MSE            70-MSE5|                                                                                                      
                            3-MSE                                             54-MSE                81                                                                                                      
                                7-MSE
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RQA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RQA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RQA)

(-) Gene Ontology  (0, 0)

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    Leu A:47 - Lys A:48   [ RasMol ]  
 
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