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(-) Description

Title :  CRYSTAL STRUCTURE OF MALYL-COA LYASE FROM METHYLOBACTERIUM EXTORQUENS
 
Authors :  J. M. Gonzalez, R. Marti-Arbona, C. J. Unkefer
Date :  28 Oct 14  (Deposition) - 17 Dec 14  (Release) - 17 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.56
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Biol. Unit 2:  A  (6x)
Keywords :  Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. M. Gonzalez, R. Marti-Arbona, C. J. Unkefer
Crystal Structure Of Malyl-Coa Lyase From Methylobacterium Extorquens
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MALYL-COA LYASE/BETA-METHYLMALYL-COA LYASE
    Chains: A
    EC Number: 4.1.3.24
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: MCL, METDI2485
    Organism Scientific: METHYLOBACTERIUM EXTORQUENS
    Organism Taxid: 661410
    Strain: DSM 5838 / DM4

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A
Biological Unit 2 (6x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric Unit (3, 3)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL
2CL1Ligand/IonCHLORIDE ION
3MG1Ligand/IonMAGNESIUM ION
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
11PE3Ligand/IonPENTAETHYLENE GLYCOL
2CL-1Ligand/IonCHLORIDE ION
3MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (1, 6)
No.NameCountTypeFull Name
11PE6Ligand/IonPENTAETHYLENE GLYCOL
2CL-1Ligand/IonCHLORIDE ION
3MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:45 , GLU A:140 , ASP A:167 , HOH A:501 , HOH A:502 , HOH A:503BINDING SITE FOR RESIDUE MG A 401
2AC2SOFTWAREGLY A:164 , VAL A:165 , ALA A:166 , ASP A:167 , HOH A:501BINDING SITE FOR RESIDUE CL A 402
3AC3SOFTWAREGLU A:94 , ALA A:126 , LYS A:127BINDING SITE FOR RESIDUE 1PE A 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ROQ)

(-) Cis Peptide Bonds  (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:322
                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeeee..hhhhhhhhhh....eeeee.....hhhhhhhhhhhhhhhhhhh.....eeeee.......hhhhhhhhhhhhh....eeee....hhhhhhhhhhhhhhhhhhhh.....eeeeee.hhhhhhhhhhhh.....eeeeeehhhhhhhhhh.............eee..........eee...hhhhhhhhhhhhhhhh.eeee.......hhhhhhhhhhhhhhhh..eeee...hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh...eee..eeehhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4roq A   2 SFTLIQQATPRLHRSELAVPGSNPTFMEKSAASKADVIFLDLEDAVAPDDKEQARKNIIQALNDLDWGNKTMMIRINGLDTHYMYRDVVDIVEACPRLDMILIPKVGVPADVYAIDVLTTQIEQAKKREKKIGFEVLIETALGMANVEAIATSSKRLEAMSFGVADYAASTRARSTVIGGVNADYSVLTDKDEAGNRQTHWQDPWLFAQNRMLVACRAYGLRPIDGPFGDFSDPDGYTSAARRCAALGFEGKWAIHPSQIDLANEVFTPSEAEVTKARRILEAMEEAAKAGRGAVSLDGRLIDIASIRMAEALIQKADAMGG 323
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ROQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ROQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ROQ)

(-) Gene Ontology  (4, 4)

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4rop 4ror 4ros