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(-) Description

Title :  CRYSTAL STRUCTURE OF KKF MUTANT OF BLA G 2 PROTEIN
 
Authors :  M. Li, A. Gustchina, A. Pomes, A. Wlodawer
Date :  16 Oct 14  (Deposition) - 21 Oct 15  (Release) - 21 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  A,B  (1x)
Biol. Unit 6:  C,D  (1x)
Keywords :  Bla G 2, Allegen, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Li, A. Gustchina, A. Pomes, A. Wlodawer
To Be Determined
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ASPARTIC PROTEASE BLA G 2
    Chains: A, B, C, D
    EC Number: 3.4.23.-
    Engineered: YES
    Expression System: KOMAGATAELLA PASTORIS
    Expression System Plasmid: PGAPZAC
    Expression System Strain: GS115
    Expression System Taxid: 4922
    Fragment: BLA G 2
    Mutation: YES
    Organism Common: GERMAN COCKROACH
    Organism Scientific: BLATTELLA GERMANICA
    Organism Taxid: 6973
    Synonym: ALLERGEN BLA G II

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D
Biological Unit 5 (1x): AB  
Biological Unit 6 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 12)

Asymmetric Unit (2, 12)
No.NameCountTypeFull Name
1NAG8Ligand/IonN-ACETYL-D-GLUCOSAMINE
2ZN4Ligand/IonZINC ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
2ZN-1Ligand/IonZINC ION
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
2ZN-1Ligand/IonZINC ION
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
2ZN-1Ligand/IonZINC ION
Biological Unit 4 (1, 2)
No.NameCountTypeFull Name
1NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
2ZN-1Ligand/IonZINC ION
Biological Unit 5 (1, 4)
No.NameCountTypeFull Name
1NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
2ZN-1Ligand/IonZINC ION
Biological Unit 6 (1, 4)
No.NameCountTypeFull Name
1NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
2ZN-1Ligand/IonZINC ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:257 , ASN A:268 , ILE A:269 , SER A:270 , TYR A:273 , HIS A:308 , TYR A:309 , NAG A:502BINDING SITE FOR RESIDUE NAG A 501
02AC2SOFTWARENAG A:501BINDING SITE FOR RESIDUE NAG A 502
03AC3SOFTWAREHIS A:155 , HIS A:161 , ASP A:303 , ASP A:307BINDING SITE FOR RESIDUE ZN A 503
04AC4SOFTWAREASN B:268 , SER B:270 , TYR B:273 , HIS B:308 , TYR B:309 , NAG B:402BINDING SITE FOR RESIDUE NAG B 401
05AC5SOFTWARENAG B:401BINDING SITE FOR RESIDUE NAG B 402
06AC6SOFTWAREHIS B:155 , HIS B:161 , ASP B:303 , ASP B:307BINDING SITE FOR RESIDUE ZN B 403
07AC7SOFTWAREASN C:268 , ILE C:269 , SER C:270 , TYR C:273 , HIS C:308 , TYR C:309 , NAG C:402BINDING SITE FOR RESIDUE NAG C 401
08AC8SOFTWAREGLN C:272 , NAG C:401BINDING SITE FOR RESIDUE NAG C 402
09AC9SOFTWAREHIS C:155 , HIS C:161 , ASP C:303 , ASP C:307BINDING SITE FOR RESIDUE ZN C 403
10BC1SOFTWAREASP D:257 , ASN D:268 , ILE D:269 , SER D:270 , TYR D:273 , HIS D:308 , TYR D:309 , NAG D:402BINDING SITE FOR RESIDUE NAG D 401
11BC2SOFTWARENAG D:401BINDING SITE FOR RESIDUE NAG D 402
12BC3SOFTWAREHIS D:155 , HIS D:161 , ASP D:303 , ASP D:307BINDING SITE FOR RESIDUE ZN D 403

(-) SS Bonds  (20, 20)

Asymmetric Unit
No.Residues
1A:36 -A:127
2A:45 -A:50
3A:51A-A:113
4A:237 -A:245
5A:249 -A:282
6B:36 -B:127
7B:45 -B:50
8B:51A-B:113
9B:237 -B:245
10B:249 -B:282
11C:36 -C:127
12C:45 -C:50
13C:51A-C:113
14C:237 -C:245
15C:249 -C:282
16D:36 -D:127
17D:45 -D:50
18D:51A-D:113
19D:237 -D:245
20D:249 -D:282

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4RLD)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RLD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RLD)

(-) Exons   (0, 0)

(no "Exon" information available for 4RLD)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:330
                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........eeeee....eeeeee..eeeeeeee.....eeee.....hhhhhh...........ee.....eeeee...eeeeeeeeeeeeee..eeeeeeeeeeeeee.hhhhhh...eeee.............hhhhhhhhh.....eeeeeeee.....eeeeeee...hhh.eeeeeeeee........eeeeeeee..eeee....eeee......eeeehhhhhhhhhhhh.eeee....eeeeehhhhh.....eeeee..eeeeehhhhheeee..eeee.eeee.....eeehhhhhh.eeeeee....eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4rld A   -8 GASIVPLYKLVHVFINTQYAGITKIGNQNFLTVFDSTSCNVVVASQECVGGACVCPNLQKYEKLKPKYISDGNVQVKFFDTGSAVGRGIEDSLTISQLTTSQQDIVLADELSQEVCILSADVVVGIAAPGCPNALAGKTVLENFVEENLIAPVFSIHHARFQDGEHYGEIIFGGSDWKYVDGEFTYVPLVGDDSWKFRLDGVKIGDTTVAPAGTQAIIDTSKAIIVGPKAYVNPINEAIGCVVEKTTTRRICKLDCSAIPSLPDVTFVINGRNFNISSQYYIQQNGNLCYSGFQPCGHSDHFFIGDFFVDHYYSEFNWENKTMGFGRSVE  327
                                     1      ||15     || 27        37        47    ||  55     || 68|       76        86        96       106||     117      126A       136       146|      157  ||   165       175       185       195       205  ||   216       226       236      |243       253       263       273       283       297       307       317       327
                                            8|      21|                         51A|        61| 68A     75A                             107|              126A                 146|        159A|                                              208|                             242A||                                               292|                              
                                            13       24                          51B         65                                          109                                    148         159B                                               210                              242B|                                                297                              
                                                                                                                                                                                                                                                                                 242C                                                                                 


Chain B from PDB  Type:PROTEIN  Length:330
                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........eeeee....eeeeee..eeeeeeee.....eeee.....hhhhhh..................eeeee...eeeeeeeeeeeeee..eeeeeeeeeeeeee.hhhhhh...eeee.............hhhhhhhhh.....eeeeeeee.....eeeeeee...hhh.eeeeeeeee........ee..eeee..eeee....eeee......eeeehhhhhhhhhhhh.eeee....eeeeehhhhh.....eeeee..eeeeehhhhheeee..eeee.eeee.....eeehhhhhh.eeeeee....eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4rld B   -8 GASIVPLYKLVHVFINTQYAGITKIGNQNFLTVFDSTSCNVVVASQECVGGACVCPNLQKYEKLKPKYISDGNVQVKFFDTGSAVGRGIEDSLTISQLTTSQQDIVLADELSQEVCILSADVVVGIAAPGCPNALAGKTVLENFVEENLIAPVFSIHHARFQDGEHYGEIIFGGSDWKYVDGEFTYVPLVGDDSWKFRLDGVKIGDTTVAPAGTQAIIDTSKAIIVGPKAYVNPINEAIGCVVEKTTTRRICKLDCSAIPSLPDVTFVINGRNFNISSQYYIQQNGNLCYSGFQPCGHSDHFFIGDFFVDHYYSEFNWENKTMGFGRSVE  327
                                     1      ||15     || 27        37        47    ||  55     || 68|       76        86        96       106||     117      126A       136       146|      157  ||   165       175       185       195       205  ||   216       226       236      |243       253       263       273       283       297       307       317       327
                                            8|      21|                         51A|        61| 68A     75A                             107|              126A                 146|        159A|                                              208|                             242A||                                               292|                              
                                            13       24                          51B         65                                          109                                    148         159B                                               210                              242B|                                                297                              
                                                                                                                                                                                                                                                                                 242C                                                                                 


Chain C from PDB  Type:PROTEIN  Length:330
                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........eeeee....eeeeee..eeeeeeee.....eeee.....hhhhhh............eeeeeeeeeee...eeeeeeeeeeeeee..eeeeeeeeeeeeee.hhhhhh...eeee.............hhhhhhhhh.....eeeeeeee.....eeeeeee...hhh.eeeeeeeee........ee..eeee..eeee....eeee......eeeehhhhhhhhhhhh.eee......eeeehhhhhhhh..eeeee..eeeeehhhhheeee..eeee.eeee.....eeehhhhhh.eeeeee....eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4rld C   -8 GASIVPLYKLVHVFINTQYAGITKIGNQNFLTVFDSTSCNVVVASQECVGGACVCPNLQKYEKLKPKYISDGNVQVKFFDTGSAVGRGIEDSLTISQLTTSQQDIVLADELSQEVCILSADVVVGIAAPGCPNALAGKTVLENFVEENLIAPVFSIHHARFQDGEHYGEIIFGGSDWKYVDGEFTYVPLVGDDSWKFRLDGVKIGDTTVAPAGTQAIIDTSKAIIVGPKAYVNPINEAIGCVVEKTTTRRICKLDCSAIPSLPDVTFVINGRNFNISSQYYIQQNGNLCYSGFQPCGHSDHFFIGDFFVDHYYSEFNWENKTMGFGRSVE  327
                                     1      ||15     || 27        37        47    ||  55     || 68|       76        86        96       106||     117      126A       136       146|      157  ||   165       175       185       195       205  ||   216       226       236      |243       253       263       273       283       297       307       317       327
                                            8|      21|                         51A|        61| 68A     75A                             107|              126A                 146|        159A|                                              208|                             242A||                                               292|                              
                                            13       24                          51B         65                                          109                                    148         159B                                               210                              242B|                                                297                              
                                                                                                                                                                                                                                                                                 242C                                                                                 


Chain D from PDB  Type:PROTEIN  Length:330
                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........eeeeee...eeeeee..eeeeeeee.....eeee.....hhhhhh...........ee.....eeeee...eeeeeeeeeeeeee..eeeeeeeeeeeeee.hhhhhh...eeee..............hhhhhhhh.....eeeeeeee.....eeeeeee...hhhhh....eeee........ee..eeee..eeee....eeee......eeeehhhhhhhhhhhh.eee......eeeehhhhh.....eeeee..eeeeehhhhheeee..eeee.eeee....eeeehhhhhh.eeeeee....eeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4rld D   -8 GASIVPLYKLVHVFINTQYAGITKIGNQNFLTVFDSTSCNVVVASQECVGGACVCPNLQKYEKLKPKYISDGNVQVKFFDTGSAVGRGIEDSLTISQLTTSQQDIVLADELSQEVCILSADVVVGIAAPGCPNALAGKTVLENFVEENLIAPVFSIHHARFQDGEHYGEIIFGGSDWKYVDGEFTYVPLVGDDSWKFRLDGVKIGDTTVAPAGTQAIIDTSKAIIVGPKAYVNPINEAIGCVVEKTTTRRICKLDCSAIPSLPDVTFVINGRNFNISSQYYIQQNGNLCYSGFQPCGHSDHFFIGDFFVDHYYSEFNWENKTMGFGRSVE  327
                                     1      ||15     || 27        37        47    ||  55     || 68|       76        86        96       106||     117      126A       136       146|      157  ||   165       175       185       195       205  ||   216       226       236      |243       253       263       273       283       297       307       317       327
                                            8|      21|                         51A|        61| 68A     75A                             107|              126A                 146|        159A|                                              208|                             242A||                                               292|                              
                                            13       24                          51B         65                                          109                                    148         159B                                               210                              242B|                                                297                              
                                                                                                                                                                                                                                                                                 242C
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RLD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RLD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RLD)

(-) Gene Ontology  (5, 5)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        ASP2_BLAGE | P54958: 1yg9 2nr6 3liz

(-) Related Entries Specified in the PDB File

1yg9