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(-) Description

Title :  CRYSTAL STRUCTURE OF SUGAR TRANSPORTER RHE_PF00321 FROM RHIZOBIUM ETLI, TARGET EFI-510806, AN OPEN CONFORMATION
 
Authors :  Y. Patskovsky, R. Toro, R. Bhosle, N. Al Obaidi, S. Chamala, J. D. Atton A. Scott Glenn, S. Chowdhury, J. Lafleur, R. D. Siedel, B. Hillerich, K. L. Whalen, J. A. Gerlt, S. C. Almo, Enzyme Function Initiative (E
Date :  11 Oct 14  (Deposition) - 05 Nov 14  (Release) - 05 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Sugar Transporter, Abc-Type, Enzyme Function Initiative, Efi, Structural Genomics, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Patskovsky, R. Toro, R. Bhosle, N. Al Obaidi, S. Chamala, A. Scott Glenn, J. D. Attonito, S. Chowdhury, J. Lafleur, R. D. Siedel B. Hillerich, J. Love, K. L. Whalen, J. A. Gerlt, S. C. Almo, Enzyme Function Initiative (Efi)
Crystal Structure Of Sugar Transporter Rhe_pf00321 From Rhizobium Etli, Target Efi-510806
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE SUGAR ABC TRANSPORTER, SUBSTRATE-BINDING PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: RHE_PF00321
    Organism Scientific: RHIZOBIUM ETLI
    Organism Taxid: 347834
    Strain: CFN 42

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric Unit (2, 3)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2CL2Ligand/IonCHLORIDE ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1ACT-1Ligand/IonACETATE ION
2CL-1Ligand/IonCHLORIDE ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2CL-1Ligand/IonCHLORIDE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:97 , GLN A:307 , ILE A:308BINDING SITE FOR RESIDUE CL A 501
2AC2SOFTWARETRP A:172 , ALA A:173BINDING SITE FOR RESIDUE CL A 502
3AC3SOFTWARETHR B:171 , TRP B:172 , ALA B:173 , PRO B:296 , ASP B:297 , HOH B:843BINDING SITE FOR RESIDUE ACT B 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4RK2)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4RK2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RK2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RK2)

(-) Exons   (0, 0)

(no "Exon" information available for 4RK2)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:393
                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.hhhhh.hhhhhhhhhhhhh..eeeeeee....hhhhhhhhhhhhhh....eeee.hhhhhhhhhhh.....hhhhhhhh...hhhhhhhhhhhee..ee..eeeeeeeeeeeeehhhhhhh.........hhhhhhhhhhhhh..hhhhh.eee.....hhhhhhhhhh.........hhhhhhhhhhhhhhhhhh....hhhhhhhhh.hhhhhhhh..eeeeeee.hhhhhhhhhhhhh......eeeee..........eeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhh......hhhhhhh....eeee......hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rk2 A  32 AVTLKWALWDWDKTAYYKPLIEAYQAKHPNVKFEPMDLGSQDYQQMISTQLTGGSKDIDIVTIKDVPGYTNLVRAGNIADLSGFVKDQKIDPAPYGGLIEELTIDGKIYSLPFRSDFWIVYYNKDIFDKAGVPYPTNDMTWAQFDETAEKLAGGMGTNKTYGALLHTWRSTVQLPGILDGKHTLVDGDYAFLKPWYERALTLQKDGAIPSYAFLKTSNTHYSALFFNGTIGMLPMGTWFVGTQIAKVKSGESKSKNWGIVKFPHPDGVPAGTTAAQISGLAVNSNSQHKDAALDFIKFVAGPEGAAVVAATGTFPALKTADVSAKIASTPGFPQDEASKEALIPAKAYLEMAVNPNAAKIEVVLNRAHDAIMTDNTSVDDGLKEMTEGVKAIK 424
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421   


Chain B from PDB  Type:PROTEIN  Length:400
                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeeee.......hhhhhhhhhhhhh..eeeeeee....hhhhhhhhhhhhhh....eeee.hhhhhhhhhhhh....hhhhhhhh...hhhhhhhhhhh........eeeeeeeeeeeeehhhhhhhh........hhhhhhhhhhhhh..hhhhh.eee.....hhhhhhhhhh.........hhhhhhhhhhhhhhhhhh....hhhhhhhhh.hhhhhhhh..eeeeeee.hhhhhhhhhhhh.......eeeee..........eeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhh......hhhhhhh....eeee......hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rk2 B  25 SMALAQEAVTLKWALWDWDKTAYYKPLIEAYQAKHPNVKFEPMDLGSQDYQQMISTQLTGGSKDIDIVTIKDVPGYTNLVRAGNIADLSGFVKDQKIDPAPYGGLIEELTIDGKIYSLPFRSDFWIVYYNKDIFDKAGVPYPTNDMTWAQFDETAEKLAGGMGTNKTYGALLHTWRSTVQLPGILDGKHTLVDGDYAFLKPWYERALTLQKDGAIPSYAFLKTSNTHYSALFFNGTIGMLPMGTWFVGTQIAKVKSGESKSKNWGIVKFPHPDGVPAGTTAAQISGLAVNSNSQHKDAALDFIKFVAGPEGAAVVAATGTFPALKTADVSAKIASTPGFPQDEASKEALIPAKAYLEMAVNPNAAKIEVVLNRAHDAIMTDNTSVDDGLKEMTEGVKAIK 424
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RK2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RK2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RK2)

(-) Gene Ontology  (2, 2)

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