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(-) Description

Title :  AEROCOCCUS VIRIDANS L-LACTATE OXIDASE MUTANT
 
Authors :  D. Rainer, B. Nidetzky, D. K. Wilson
Date :  08 Oct 14  (Deposition) - 03 Dec 14  (Release) - 11 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Beta/Alpha Barrel, Tim Barrel, Oxidase, Fmn, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Stoisser, D. Rainer, S. Leitgeb, D. K. Wilson, B. Nidetzky
The Ala95-To-Gly Substitution In Aerococcus Viridans L-Lactate Oxidase Revisited - Structural Consequences At Th Catalytic Site And Effect On Reactivity With O2 And Other Electron Acceptors.
Febs J. V. 282 562 2015
PubMed-ID: 25423902  |  Reference-DOI: 10.1111/FEBS.13162

(-) Compounds

Molecule 1 - LACTATE OXIDASE
    Chains: A, B, C, D
    EC Number: 1.13.12.4
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Mutation: YES
    Organism Scientific: AEROCOCCUS VIRIDANS
    Organism Taxid: 1377

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 11)

Asymmetric/Biological Unit (3, 11)
No.NameCountTypeFull Name
1EDO3Ligand/Ion1,2-ETHANEDIOL
2FNR4Ligand/Ion1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL
3PYR4Ligand/IonPYRUVIC ACID

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREALA A:92 , PRO A:93 , ILE A:94 , GLY A:95 , SER A:122 , GLN A:144 , TYR A:146 , THR A:172 , LYS A:241 , SER A:263 , HIS A:265 , GLY A:266 , ARG A:268 , ASP A:296 , SER A:297 , GLY A:298 , VAL A:299 , ARG A:300 , GLY A:319 , ARG A:320 , PYR A:402 , HOH A:501 , HOH A:508 , HOH A:514BINDING SITE FOR RESIDUE FNR A 401
02AC2SOFTWARETYR A:40 , TYR A:124 , TYR A:146 , ARG A:181 , LEU A:211 , TYR A:215 , HIS A:265 , ARG A:268 , FNR A:401 , HOH A:695BINDING SITE FOR RESIDUE PYR A 402
03AC3SOFTWAREGLU A:26 , LYS A:51 , HOH A:510 , HOH A:552BINDING SITE FOR RESIDUE EDO A 403
04AC4SOFTWAREALA B:92 , PRO B:93 , ILE B:94 , GLY B:95 , SER B:122 , GLN B:144 , TYR B:146 , THR B:172 , LYS B:241 , SER B:263 , HIS B:265 , GLY B:266 , ARG B:268 , ASP B:296 , SER B:297 , GLY B:298 , ARG B:300 , GLY B:319 , ARG B:320 , PYR B:402 , HOH B:503 , HOH B:511 , HOH B:519 , HOH B:693BINDING SITE FOR RESIDUE FNR B 401
05AC5SOFTWARETYR B:40 , TYR B:146 , ARG B:181 , LEU B:211 , TYR B:215 , HIS B:265 , ARG B:268 , FNR B:401 , HOH B:693BINDING SITE FOR RESIDUE PYR B 402
06AC6SOFTWAREGLU B:26 , LYS B:51 , HOH B:510 , HOH B:529BINDING SITE FOR RESIDUE EDO B 403
07AC7SOFTWAREALA C:92 , PRO C:93 , ILE C:94 , GLY C:95 , SER C:122 , GLN C:144 , TYR C:146 , THR C:172 , LYS C:241 , SER C:263 , HIS C:265 , GLY C:266 , ARG C:268 , ASP C:296 , SER C:297 , GLY C:298 , VAL C:299 , ARG C:300 , GLY C:319 , ARG C:320 , PYR C:402 , HOH C:501 , HOH C:511 , HOH C:531BINDING SITE FOR RESIDUE FNR C 401
08AC8SOFTWARETYR C:40 , TYR C:146 , ARG C:181 , LEU C:211 , HIS C:265 , ARG C:268 , FNR C:401 , HOH C:735BINDING SITE FOR RESIDUE PYR C 402
09AC9SOFTWAREGLU C:26 , LYS C:51 , HOH C:518 , HOH C:522BINDING SITE FOR RESIDUE EDO C 403
10BC1SOFTWAREALA D:92 , PRO D:93 , ILE D:94 , GLY D:95 , SER D:122 , GLN D:144 , TYR D:146 , THR D:172 , LYS D:241 , SER D:263 , HIS D:265 , GLY D:266 , ARG D:268 , ASP D:296 , SER D:297 , GLY D:298 , VAL D:299 , ARG D:300 , GLY D:319 , ARG D:320 , PYR D:402 , HOH D:502 , HOH D:506 , HOH D:541 , HOH D:634BINDING SITE FOR RESIDUE FNR D 401
11BC2SOFTWARETYR D:40 , TYR D:124 , TYR D:146 , ARG D:181 , LEU D:211 , TYR D:215 , HIS D:265 , ARG D:268 , FNR D:401 , HOH D:634BINDING SITE FOR RESIDUE PYR D 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4RJE)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4RJE)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RJE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RJE)

(-) Exons   (0, 0)

(no "Exon" information available for 4RJE)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:367
                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................hhhhhhhhh..hhhhhhhhhh....hhhhhhhhhh...eee..............eee..eee...eee....hhhhh..hhhhhhhhhhhhhh..eeee.....hhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhh...eeee........hhhhhhhh.........hhhhh.....hhhhhhhhh....hhhhhhhhhhhhh..eeeeee.hhhhhhhhhhh...eeee.hhhhh......hhhhhhhhhhhhhh....eee.....hhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhh..eee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rje A   6 IEYNAPSEIKYIDVVNTYDLEEEASKVVPHGGFNYIAGASGDEWTKRANDRAWKHKLLYPRLAQDVEAPDTSTEILGHKIKAPFIMAPIGAHGLAHATKEAGTARAVSEFGTIMSISAYSGATFEEISEGLNGGPRWFQIYMAKDDQQNRDILDEAKGDGATAIILTADSTVSGNRDRDVKNKFVYPFGMPIVQRYLTAEGMSLNNIYGASKQKISPRDIEEIAAHSGLPVFVKGIQHPEDADMAIKAGASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKALASGADVVALGRPVLFGLALGGWQGAYSVLDYFQKDLTRVMQLTGSQNVEDLKGLDLFDNPYGYEY 374
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195      |207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       
                                                                                                                                                                                                                              202|                                                                                                                                                                         
                                                                                                                                                                                                                               205                                                                                                                                                                         


Chain B from PDB  Type:PROTEIN  Length:362
                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhhhhhhh..hhhhhhhhhh....hhhhhhhhhh...eee..............eee..eee...eee....hhhhh..hhhhhhhhhhhhhh..eeee.....hhhhhhhhhh...eeeee....hhhhhhhhhhhhhhh....eeee........hhhhhhh................hhhhhhhhh....hhhhhhhhhhhhh..eeeeee.hhhhhhhhhhh...eeee.hhhhh......hhhhhhhhhhhhhh....eee.....hhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhh..eee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rje B   7 EYNAPSEIKYIDVVNTYDLEEEASKVVPHGGFNYIAGASGDEWTKRANDRAWKHKLLYPRLAQDVEAPDTSTEILGHKIKAPFIMAPIGAHGLAHATKEAGTARAVSEFGTIMSISAYSGATFEEISEGLNGGPRWFQIYMAKDDQQNRDILDEAKGDGATAIILTADSTVSGNRDRDVKNKFVYPFGMPIVTAEGMSLNNIYGASKQKISPRDIEEIAAHSGLPVFVKGIQHPEDADMAIKAGASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKALASGADVVALGRPVLFGLALGGWQGAYSVLDYFQKDLTRVMQLTGSQNVEDLKGLDLFDNPYGYEY 374
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196 ||    212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372  
                                                                                                                                                                                                                         198|                                                                                                                                                                         
                                                                                                                                                                                                                          205                                                                                                                                                                         


Chain C from PDB  Type:PROTEIN  Length:361
                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhhhhhh..hhhhhhhhhh....hhhhhhhhhh...eee..............eee..eee...eee....hhhhh..hhhhhhhhhhhhhh..eeee.....hhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhh...eeee........hhhhhhh..........hhhhh..............hhhhhhhhhhhhh..eeeeee.hhhhhhhhhhh...eeee.hhhhh......hhhhhhhhhhhhhh....eee.....hhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhh..eee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rje C   8 YNAPSEIKYIDVVNTYDLEEEASKVVPHGGFNYIAGASGDEWTKRANDRAWKHKLLYPRLAQDVEAPDTSTEILGHKIKAPFIMAPIGAHGLAHATKEAGTARAVSEFGTIMSISAYSGATFEEISEGLNGGPRWFQIYMAKDDQQNRDILDEAKGDGATAIILTADSTVSGNRDRDVKNKFVYPFGMPIVQRYLTAEGMSLNNSKQKISPRDIEEIAAHSGLPVFVKGIQHPEDADMAIKAGASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKALASGADVVALGRPVLFGLALGGWQGAYSVLDYFQKDLTRVMQLTGSQNVEDLKGLDLFDNPYGYEY 374
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197    || 209   ||  223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373 
                                                                                                                                                                                                                            202|     213|                                                                                                                                                            
                                                                                                                                                                                                                             205      218                                                                                                                                                            


Chain D from PDB  Type:PROTEIN  Length:365
                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................hhhhhhhh..hhhhhhhhhh....hhhhhhhhhh...eee..............eee..eee...eee....hhhhh..hhhhhhhhhhhhhh..eeee.....hhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhh...eeee........hhhhhhh..........hhhhh.....hhhhhhhhh....hhhhhhhhhhhhh..eeeeee.hhhhhhhhhhh...eeee.hhhhh......hhhhhhhhhhhhhh....eee.....hhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhh..eee....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rje D   8 YNAPSEIKYIDVVNTYDLEEEASKVVPHGGFNYIAGASGDEWTKRANDRAWKHKLLYPRLAQDVEAPDTSTEILGHKIKAPFIMAPIGAHGLAHATKEAGTARAVSEFGTIMSISAYSGATFEEISEGLNGGPRWFQIYMAKDDQQNRDILDEAKGDGATAIILTADSTVSGNRDRDVKNKFVYPFGMPIVQRYLTAEGMSLNNIYGASKQKISPRDIEEIAAHSGLPVFVKGIQHPEDADMAIKAGASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKALASGADVVALGRPVLFGLALGGWQGAYSVLDYFQKDLTRVMQLTGSQNVEDLKGLDLFDNPYGYEY 374
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197    || 209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369     
                                                                                                                                                                                                                            202|                                                                                                                                                                         
                                                                                                                                                                                                                             205
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RJE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RJE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RJE)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

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  4rje
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 Related Entries

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UniProtKB/TrEMBL
        Q44467_9LACT | Q44467: 2du2 2e77 2j6x 2nli 2zfa 4yl2 5ebu

(-) Related Entries Specified in the PDB File

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