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(-) Description

Title :  SERINE PROTEASE HTRA3, MUTATIONALLY INACTIVATED
 
Authors :  J. Osipiuk, P. Glaza, T. Wenta, B. Lipinska, A. Joachimiak, Midwest Ce Structural Genomics (Mcsg)
Date :  03 Oct 14  (Deposition) - 29 Oct 14  (Release) - 09 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.27
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Structural Genomics, Psi-Biology, Midwest Center For Structural Genomics, Mcsg, National Science Center - Poland, Protease, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Glaza, J. Osipiuk, T. Wenta, D. Zurawa-Janicka, M. Jarzab, A. Lesner, B. Banecki, J. Skorko-Glonek, A. Joachimiak, B. Lipinska
Structural And Functional Analysis Of Human Htra3 Protease And Its Subdomains.
Plos One V. 10 31142 2015
PubMed-ID: 26110759  |  Reference-DOI: 10.1371/JOURNAL.PONE.0131142

(-) Compounds

Molecule 1 - SERINE PROTEASE HTRA3
    Chains: A, B, C
    EC Number: 3.4.21.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-COCO2 MODIFIED
    Expression System Strain: BL21(DE3)DEL_CLPP
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 130-453
    Gene: HTRA3, PRSP
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: HIGH-TEMPERATURE REQUIREMENT FACTOR A3, PREGNANCY-RELATED SERINE PROTEASE

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1PO42Ligand/IonPHOSPHATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:354 , GLY A:455 , HIS A:457 , HIS A:458BINDING SITE FOR RESIDUE PO4 A 501
2AC2SOFTWAREPHE A:356 , ILE A:357 , GLY A:358 , ILE A:359 , MET A:361 , GLN A:423BINDING SITE FOR RESIDUE PO4 A 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4RI0)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ser A:430 -Pro A:431

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RI0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RI0)

(-) Exons   (0, 0)

(no "Exon" information available for 4RI0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:306
                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhh..eeeeeeee...eeeeeeeeeee...eeee..............eeeeee.....eeeeeeeeee....eeeeee............hhhhh....eeeeee.......eeeeee.......eee...........eee.....eeeeeeeeee..eeeeeehhhhhhhhhh........eeeee..eeeee.hhhhhhhhhhh..........eeeeee...............eeeee..ee..hhhhhhhhhhhh..eeeeeee..eeeeeee..eeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ri0 A 135 SPRYKFNFIADVVEKIAPAVVHIELFLRNVPLSSGSGFIMSEAGLIITNAHVVSSNSAAPGRQQLKVQLQNGDSYEATIKDIDKKSDIATIKIHPKKKLPVLLLGHSADLRPGEFVVAIGSPFALQNTVTTGIVSTDMDYIQTDAIINYGNAGGPLVNLDGEVIGINTLKVTAGISFAIPSDRITRFLTEFQDKQIKDWKKRFIGIRMRTITPSLVDELKASNPDFPEVSSGIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLVDSSELQEAVLTESPLLLEVRRGNDDLLFSIAPEVVMGGHHHH 459
                                   144       154       170       180       190       200       210       220       230       240       250       260       270     ||293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453      
                                                     162|                                                                                                        276|                                                                                                                                                                         
                                                      169                                                                                                         290                                                                                                                                                                         


Chain B from PDB  Type:PROTEIN  Length:202
                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhh..eeeeeeeee.......eeeeeeeeeeee...eeee.............eeeeeee.....eeeeeeeeee....eeeee..........ee.hhhhh....eeeeee.......eeeeeeeee....eee...........eee....eeeeeeeeeee..eeeeeehhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ri0 B 130 LHQLSSPRYKFNFIADVVEKIAPAVVHIELFLRHPLFGRNVPLSSGSGFIMSEAGLIITNAHVVSSNSAAPGRQQLKVQLQNGDSYEATIKDIDKKSDIATIKIHPKKKLPVLLLGHSADLRPGEFVVAIGSPFALQNTVTTGIVSTAQDYIQTDAIINYGNAGGPLVNLDGEVIGINTLKVTAGISFAIPSDRITRFLTEF 344
                                   139       149       159       169       179       189       199       209       219       229       239       249       259       269       292       302       312       322       332       342  
                                                                                                                                                                              278|                                                    
                                                                                                                                                                               292                                                    


Chain C from PDB  Type:PROTEIN  Length:196
                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh..eeeeeeee.hhhhh..eeeeeeeeeeee...eeee..............eeeeee.....eeeeeeeeee....eeeee..........ee.hhhhh....eeeeee.......eeeeeeeee.....eee...........eee....eeeeee.....eeeeehhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ri0 C 134 SSPRYKFNFIADVVEKIAPAVVHIELFLRHPLFGRNVPLSSGSGFIMSEAGLIITNAHVVSSNSAAPGRQQLKVQLQNGDSYEATIKDIDKKSDIATIKIHPKKKLPVLLLGHSADLRPGEFVVAIGSPFALQNTVTTGIVSTAQMDYIQTDAIINYGNAGGPLVNLDGEVIGINTLKGISFAIPSDRITRFLTEF 344
                                   143       153       163       173       183       193       203       213       223       233       243       253       263       273    || 295       305       315       328       338      
                                                                                                                                                                          278|                             323|                 
                                                                                                                                                                           291                              327
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RI0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RI0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RI0)

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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        HTRA3_HUMAN | P83110: 2p3w

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