4RHT - JenaLib

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Title :   CRYSTAL STRUCTURES OF MYCOBACTERIUM TUBERCULOSIS 6-OXOPURINE PHOSPHORIBOSYLTRANSFERASE WHICH IS A POTENTIAL TARGET FOR DRUG DEVELOPMENT AGAINST THIS DISEASE

Authors :   W. S. Eng, D. Hockova, P. Spacek, N. P. West, K. Woods, L. M. J. Naesens, D. L. W. Guddat

Date :   03 Oct 14 (Deposition) - 20 May 15 (Release) - 24 Jun 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.76

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D  (1x)
Biol. Unit 2: A,B  (1x)
Biol. Unit 3: C,D  (1x)

Keywords :   6-Oxopurine Phosphoribosyltransferases, Gmp, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   W. S. Eng, D. Hockova, P. Spacek, Z. Janeba, N. P. West, K. Woods, L. M. Naesens, D. T. Keough, L. W. Guddat
First Crystal Structures Of Mycobacterium Tuberculosis 6-Oxopurine Phosphoribosyltransferase: Complexes With Gmp And Pyrophosphate And With Acyclic Nucleoside Phosphonates Whose Prodrugs Have Antituberculosis Activity.
J. Med. Chem. V. 58 4822 2015
PubMed-ID: 25915781 | Reference-DOI: 10.1021/ACS.JMEDCHEM.5B00611

Molecule 1 - HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE HPT
	Chains	:	A, B, C, D
	Engineered	:	YES
	Organism Scientific	:	MYCOBACTERIUM TUBERCULOSIS
	Organism Taxid	:	83332
	Other Details	:	THIS SEQUENCE OCCURS NATURALLY IN MYCOBACTERIUM TUBERCULOSIS
	Synthetic	:	YES

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B	C	D
Biological Unit 2 (1x)	:	A	B
Biological Unit 3 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 16)

No.	Name	Count	Type	Full Name
1	5GP	4	Ligand/Ion	GUANOSINE-5'-MONOPHOSPHATE
2	MG	8	Ligand/Ion	MAGNESIUM ION
3	POP	4	Ligand/Ion	PYROPHOSPHATE 2-

Biological Unit 1 (2, 8)

No.	Name	Count	Type	Full Name
1	5GP	4	Ligand/Ion	GUANOSINE-5'-MONOPHOSPHATE
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	POP	4	Ligand/Ion	PYROPHOSPHATE 2-

Biological Unit 2 (2, 4)

No.	Name	Count	Type	Full Name
1	5GP	2	Ligand/Ion	GUANOSINE-5'-MONOPHOSPHATE
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	POP	2	Ligand/Ion	PYROPHOSPHATE 2-

Biological Unit 3 (2, 4)

No.	Name	Count	Type	Full Name
1	5GP	2	Ligand/Ion	GUANOSINE-5'-MONOPHOSPHATE
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	POP	2	Ligand/Ion	PYROPHOSPHATE 2-

Asymmetric Unit (16, 16)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	LEU A:65 , LYS A:66 , GLY A:67 , ASP A:182 , ARG A:188 , 5GP A:302 , MG A:304	BINDING SITE FOR RESIDUE POP A 301
02	AC2	SOFTWARE	VAL A:124 , ASP A:126 , LYS A:154 , PHE A:175 , VAL A:176 , ASP A:182 , POP A:301 , HOH A:417	BINDING SITE FOR RESIDUE 5GP A 302
03	AC3	SOFTWARE	GLU A:122 , ASP A:123 , HOH A:401 , HOH A:417	BINDING SITE FOR RESIDUE MG A 303
04	AC4	SOFTWARE	ASP A:182 , POP A:301	BINDING SITE FOR RESIDUE MG A 304
05	AC5	SOFTWARE	LEU B:65 , LYS B:66 , GLY B:67 , ASP B:182 , ARG B:188 , 5GP B:302 , MG B:304 , HOH B:413	BINDING SITE FOR RESIDUE POP B 301
06	AC6	SOFTWARE	LYS B:154 , PHE B:175 , VAL B:176 , LEU B:181 , ASP B:182 , POP B:301 , HOH B:415	BINDING SITE FOR RESIDUE 5GP B 302
07	AC7	SOFTWARE	GLU B:122 , ASP B:123 , HOH B:415	BINDING SITE FOR RESIDUE MG B 303
08	AC8	SOFTWARE	ASP B:182 , POP B:301 , HOH B:401 , HOH B:413	BINDING SITE FOR RESIDUE MG B 304
09	AC9	SOFTWARE	LYS C:66 , GLY C:67 , ASP C:182 , ARG C:188 , 5GP C:302 , MG C:303	BINDING SITE FOR RESIDUE POP C 301
10	BC1	SOFTWARE	VAL C:176 , LEU C:181 , ASP C:182 , POP C:301	BINDING SITE FOR RESIDUE 5GP C 302
11	BC2	SOFTWARE	ASP C:182 , POP C:301	BINDING SITE FOR RESIDUE MG C 303
12	BC3	SOFTWARE	GLU C:122 , ASP C:123 , HOH C:403 , HOH C:404	BINDING SITE FOR RESIDUE MG C 304
13	BC4	SOFTWARE	LYS D:66 , GLY D:67 , ASP D:182 , ARG D:188 , 5GP D:302 , MG D:303	BINDING SITE FOR RESIDUE POP D 301
14	BC5	SOFTWARE	VAL D:124 , VAL D:176 , ASP D:182 , POP D:301	BINDING SITE FOR RESIDUE 5GP D 302
15	BC6	SOFTWARE	ASP D:182 , POP D:301	BINDING SITE FOR RESIDUE MG D 303
16	BC7	SOFTWARE	GLU D:122 , ASP D:123 , HOH D:404 , HOH D:406	BINDING SITE FOR RESIDUE MG D 304

(no "SS Bond" information available for 4RHT)

Asymmetric Unit

No.	Residues
1	Leu A:65	-	Lys A:66
2	Leu B:65	-	Lys B:66
3	Leu C:65	-	Lys C:66
4	Leu D:65	-	Lys D:66

(no "SAP(SNP)/Variant" information available for 4RHT)

(no "PROSITE Motif" information available for 4RHT)

(no "Exon" information available for 4RHT)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:166
                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeehhhhhhhhhhhhhhhhhhhh....eeeeee...hhhhhhhhhhhh...eeeeeeeeee....eeeee.........eeeeeeeee..hhhhhhhhhhhhh....eeeeeeeee.hhhhhh.....eeeee.....ee...............eeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rht A  22 DIKSVLLTAEQIQARIAELGEQIGNDYRGQDLLLITVLKGAVLFVTDLARAIPVPTQFEFMAVSSYGGVVRILKDLDRDIHGRDVLIVEDVVDSGLTLSWLSRNLTSRNPRSLRVCTLLRKPDAVHANVEIAYVGFDIPNDFVVGYGLDYDERYRDLSYIGTLDPR 199
                                    31        41       |57        67        77        87      |103       113       123       133       143       153       163       173       183       193      
                                                      49|                                    94|                                                                                                  
                                                       56                                    101

Chain B from PDB  Type:PROTEIN  Length:166
                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeehhhhhhhhhhhhhhhhhhhh....eeeeee...hhhhhhhhhhhh...eeeeeeeee....eeee.........eeeeeeeee..hhhhhhhhhhhhh....eeeeeeeee.hhhhh......eeeee.....ee...............eeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rht B  21 GDIKSVLLTAEQIQARIAELGEQIGNDYREQDLLLITVLKGAVLFVTDLARAIPVPTQFEFMAVSSYVVRILKDLDRDIHGRDVLIVEDVVDSGLTLSWLSRNLTSRNPRSLRVCTLLRKPDAVHANVEIAYVGFDIPNDFVVGYGLDYDERYRDLSYIGTLDPRV 200
                                    30        40        50|       66        76        86      |104       114       124       134       144       154       164       174       184       194      
                                                        50|                                  93|                                                                                                  
                                                         57                                  102

Chain C from PDB  Type:PROTEIN  Length:161
                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhh........eeeeee.....hhhhhhhhhh...eeeeeeeeee...eeeee.........eeeeeeeee...hhhhhhhhhhhhhh..eeeeeeeee...........eeee......ee................ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rht C  24 KSVLLTAEQIQARIAELGEQIGNDYRTTGQDLLLITVLKGAVLFVTDLARAIPVPTQFEFMAVSSYGVVRILKDLDRDIHGRDVLIVEDVVDSGLTLSWLSRNLTSRNPRSLRVCTLLRKPDAVANVEIAYVGFDIPNDFVVGYGLDYDERYRDLSYIGTL 196
                                    33        43     || 57        67        77        87     ||104       114       124       134       144       154   ||  165       175       185       195 
                                                    49|                                     93|                                                      158|                                    
                                                     54                                     101                                                       160

Chain D from PDB  Type:PROTEIN  Length:162
                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeehhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhh.......eeee.eee......eee...........eeeeeeeee....hhhhhhhhhhh....eeeeeeeee.......eeeeeee......................eee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4rht D  22 DIKSVLLTAEQIQARIAELGEQIGNDYQDLLLITVLKGAVLFVTDLARAIPVPTQFEFMAVSSYGSSGVVRILKDLDRDIHGRDVLIVEDVVDSGLTLSWLSRNLTSRNPRSLRVCTLLRKPDANVEIAYVGFDIPNDFVVGYGLDYDERYRDLSYIGTLDP 198
                                    31        41      ||59        69        79        89      |103       113       123       133       143       153   ||  166       176       186       196  
                                                     48|                                     96|                                                     157|                                     
                                                      57                                     101                                                      161

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4RHT)

(no "CATH Domain" information available for 4RHT)

(no "Pfam Domain" information available for 4RHT)

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	Cis Peptide Bonds
		Leu A:65 - Lys A:66	[ RasMol ]
		Leu B:65 - Lys B:66	[ RasMol ]
		Leu C:65 - Lys C:66	[ RasMol ]
		Leu D:65 - Lys D:66	[ RasMol ]

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(no "Related Entries Specified in the PDB File" available for 4RHT)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 16)

Sites (16, 16)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

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