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(-) Description

Title :  CRYSTAL STRUCTURE OF APC3-APC16 COMPLEX (SELENOMETHIONINE DERIVATIVE)
 
Authors :  M. Yamaguchi, S. Yu, D. J. Miller, B. A. Schulman
Date :  29 Sep 14  (Deposition) - 24 Dec 14  (Release) - 15 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.25
Chains :  Asym./Biol. Unit :  A,B,S
Keywords :  Asymmetric Complex, Tpr Folding, Protein Assembly, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Yamaguchi, S. Yu, R. Qiao, F. Weissmann, D. J. Miller, R. Vanderlinden, N. G. Brown, J. J. Frye, J. M. Peters, B. A. Schulman
Structure Of An Apc3-Apc16 Complex: Insights Into Assembly Of The Anaphase-Promoting Complex/Cyclosome.
J. Mol. Biol. V. 427 1748 2015
PubMed-ID: 25490258  |  Reference-DOI: 10.1016/J.JMB.2014.11.020

(-) Compounds

Molecule 1 - CELL DIVISION CYCLE PROTEIN 27 HOMOLOG
    Chains: A, B
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Taxid: 7108
    Fragment: UNP RESIDUES 1-180, 447-824
    Gene: CDC27, ANAPC3, D0S1430E, D17S978E
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ANAPHASE-PROMOTING COMPLEX SUBUNIT 3, APC3, CDC27 HOMOLOG, CDC27HS, H-NUC
 
Molecule 2 - ANAPHASE-PROMOTING COMPLEX SUBUNIT 16
    Chains: S
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Taxid: 7108
    Gene: ANAPC16, C10ORF104
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: APC16, CYCLOSOME SUBUNIT 16

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABS

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 20)

Asymmetric/Biological Unit (1, 20)
No.NameCountTypeFull Name
1MSE20Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 4RG9)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4RG9)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4RG9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RG9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RG9)

(-) Exons   (0, 0)

(no "Exon" information available for 4RG9)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:471
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.hhhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhh.......hhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhh...hhhhhh....hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh...hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rg9 A   6 EPVQAAIWQALNHYAYRDAVFLAERLYAEVHSEEALFLLATCYYRSGKAYKAYRLLKGHSCTTPQCKYLLAKCCVDLSKLAEGEQILSGGVFNKQKSHDDIVTEFGDSACFTLSLLGHVYCKTDRLAKGSECYQKSLSLNPFLWSPFESLCEIGEKPDPDQTFKFTQKAAAEGLmSLLREmGKGYLALCSYNCKEAINILSHLPSHHYNTGWVLCQIGRAYFELSEYmQAERIFSEVRRIENYRVEGmEIYSTTLWHLQKDVALSVLSKDLTDmDKNSPEAWCAAGNCFSLQREHDIAIKFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGmIYYKQEKFSLAEmHFQKALDINPQSSVLLCHIGVVQHALLNKAIVIDPKNPLCKFHRASVLFANEKYKSALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALmNFSWAmDLDP 774
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165     ||464    |  474|      484       494       504       514       524       534       544       554       564   |   574       584       594       604       614       624       634       644    |  654       664       674       684   ||  703       713       723       733       743       753       763|     |773 
                                                                                                                                                                                               171|     469-MSE |                                            522-MSE             542-MSE                   568-MSE                                                                          649-MSE      662-MSE                   688|                                                               764-MSE |    
                                                                                                                                                                                                461           475-MSE                                                                                                                                                                                                               698                                                                     770-MSE


Chain B from PDB  Type:PROTEIN  Length:472
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.hhhhhhhhhhh....hhhhhhhhhhhhhhh.hhhhhhhhhh........hhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh...hhhhhhhhhh....hhhhhh....hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh......hhhhhhhhhhh.hhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rg9 B   5 QEPVQAAIWQALNHYAYRDAVFLAERLYAEVHSEEALFLLATCYYRSGKAYKAYRLLKGHSCTTPQCKYLLAKCCVDLSKLAEGEQILSGGVFNKQKSHDDIVTEFGDSACFTLSLLGHVYCKTDRLAKGSECYQKSLSLNPFLWSPFESLCEIGEKPDPDQTFKFTKAAAEGLmSLLREmGKGYLALCSYNCKEAINILSHLPSHHYNTGWVLCQIGRAYFELSEYmQAERIFSEVRRIENYRVEGmEIYSTTLWHLQKDVALSVLSKDLTDmDKNSPEAWCAAGNCFSLQREHDIAIKFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGmIYYKQEKFSLAEmHFQKALDINPQSSVLLCHIGVVQHALTLNKAIVIDPKNPLCKFHRASVLFANEKYKSALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALmNFSWAmDLDP 774
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164      |464    |  474|      484       494       504       514       524       534       544       554       564   |   574       584       594       604       614       624       634       644    |  654       664       674       684   ||  702       712       722       732       742       752       762 |     772  
                                                                                                                                                                                                171|      |     |                                            522-MSE             542-MSE                   568-MSE                                                                          649-MSE      662-MSE                   688|                                                                764-MSE |    
                                                                                                                                                                                                 462      |     |                                                                                                                                                                                                                   697                                                                      770-MSE
                                                                                                                                                                                                        469-MSE |                                                                                                                                                                                                                                                                                                   
                                                                                                                                                                                                              475-MSE                                                                                                                                                                                                                                                                                               


Chain S from PDB  Type:PROTEIN  Length:35
                                                                   
               SCOP domains ----------------------------------- SCOP domains
               CATH domains ----------------------------------- CATH domains
               Pfam domains ----------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhh.hhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------- PROSITE
                 Transcript ----------------------------------- Transcript
                 4rg9 S  73 mQQVARmEKLAGLVEELEADEWRFKPIEQLLGFTP 107
                            |     | 82        92       102     
                            |     |                            
                           73-MSE |                            
                                 79-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RG9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RG9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RG9)

(-) Gene Ontology  (22, 34)

Asymmetric/Biological Unit(hide GO term definitions)

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  4rg9
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  APC16_HUMAN | Q96DE5
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  CDC27_HUMAN | P30260
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        APC16_HUMAN | Q96DE5: 4rg6 4ui9 5a31 5g04 5g05 5khr 5khu 5l9t 5l9u 5lcw
        CDC27_HUMAN | P30260: 3t1n 4rg6 4rg7 4ui9 5a31 5g04 5g05 5khr 5khu 5l9t 5l9u 5lcw

(-) Related Entries Specified in the PDB File

4rg6 4rg7