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(-) Description

Title :  CRYSTAL STRUCTURE OF DOUBLE-DOMAIN ARGININE KINASE FROM ANTHOPLEURA JAPONICAS IN COMPLEX WITH SUBSTRATE L-ARGININE
 
Authors :  Z. Wang, Z. Qiao, S. Ye, R. Zhang
Date :  25 Sep 14  (Deposition) - 08 Apr 15  (Release) - 22 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Double Domain, Tandem Domain, Phosphagen Kinase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. Wang, Z. Qiao, S. Ye, R. Zhang
Structure Of A Double-Domain Phosphagen Kinase Reveals An Asymmetric Arrangement Of The Tandem Domains.
Acta Crystallogr. , Sect. D V. 71 779 2015
PubMed-ID: 25849389  |  Reference-DOI: 10.1107/S1399004715001169

(-) Compounds

Molecule 1 - ARGININE KINASE
    Chains: A, B
    EC Number: 2.7.3.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Common: SEA ANEMONE
    Organism Scientific: ANTHOPLEURA JAPONICA
    Organism Taxid: 67755
    Synonym: AK

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 14)

Asymmetric Unit (2, 14)
No.NameCountTypeFull Name
1ACT8Ligand/IonACETATE ION
2ARG6Mod. Amino AcidARGININE
Biological Unit 1 (2, 7)
No.NameCountTypeFull Name
1ACT4Ligand/IonACETATE ION
2ARG3Mod. Amino AcidARGININE
Biological Unit 2 (2, 7)
No.NameCountTypeFull Name
1ACT4Ligand/IonACETATE ION
2ARG3Mod. Amino AcidARGININE

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:455 , THR A:456 , SER A:457 , HIS A:617 , HOH A:987BINDING SITE FOR RESIDUE ACT A 801
02AC2SOFTWARESER A:420 , CYS A:421 , GLY A:422 , TYR A:424 , HOH A:975BINDING SITE FOR RESIDUE ACT A 802
03AC3SOFTWAREMET A:459 , ARG A:807BINDING SITE FOR RESIDUE ACT A 803
04AC4SOFTWARESER A:67 , GLY A:68 , VAL A:69 , GLY A:70 , TYR A:72 , GLU A:229 , CYS A:275 , HOH A:913 , HOH A:1002 , HOH A:1154BINDING SITE FOR RESIDUE ARG A 805
05AC5SOFTWARESER A:126 , ARG A:128 , ARG A:284 , SER A:286 , HIS A:288 , HOH A:1267BINDING SITE FOR RESIDUE ARG A 806
06AC6SOFTWARELYS A:488 , ASP A:610 , GLY A:614 , PHE A:615 , TYR A:623 , ACT A:803 , HOH A:1094 , HOH A:1173BINDING SITE FOR RESIDUE ARG A 807
07AC7SOFTWAREARG B:480 , ARG B:482 , ARG B:585BINDING SITE FOR RESIDUE ACT B 1001
08AC8SOFTWAREHIS B:308 , GLN B:343 , ASP B:347BINDING SITE FOR RESIDUE ACT B 1002
09AC9SOFTWAREARG B:128 , ARG B:130 , ARG B:233 , ARG B:284BINDING SITE FOR RESIDUE ACT B 1003
10BC1SOFTWARESER B:67 , GLY B:68 , VAL B:69 , GLY B:70 , TYR B:72 , GLU B:229 , CYS B:275 , SER B:277 , HOH B:1119 , HOH B:1144 , HOH B:1226 , HOH B:1284BINDING SITE FOR RESIDUE ARG B 1005
11BC2SOFTWARESER B:126 , THR B:127 , ARG B:128 , MET B:237 , LYS B:239 , SER B:286 , HIS B:288 , HOH B:1151 , HOH B:1511 , HOH B:1600BINDING SITE FOR RESIDUE ARG B 1006
12BC3SOFTWAREARG B:122 , ASP B:408 , ASN B:411 , PRO B:494 , ALA B:553 , ALA B:554 , GLY B:555 , LYS B:558 , HOH B:1193 , HOH B:1353 , HOH B:1410BINDING SITE FOR RESIDUE ARG B 1007

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4RF7)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Ser A:95 -Pro A:96
2Trp A:208 -Pro A:209
3Ser A:447 -Pro A:448
4Trp A:560 -Pro A:561
5Ser B:95 -Pro B:96
6Trp B:208 -Pro B:209
7Ser B:447 -Pro B:448
8Trp B:560 -Pro B:561

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RF7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RF7)

(-) Exons   (0, 0)

(no "Exon" information available for 4RF7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:692
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhh....hhhhhh......hhhhhhhhhhhhhhhh........hhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhh.............hhhhh...........eeeeeeeeee...........hhhhhhhhhhhhhhhhhhhhhhh.eeeee....hhhhhhhhhhh.......hhhhhhh..........eeeee....eeeee.....eeeeeeee..hhhhhhhhhhhhhhhhhhhhh..ee...ee...hhhhh...eeeeeeee..hhhhh.hhhhhhhhh.eeee.....eeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh....hhhhhhhhhhhhhhhh........hhhhhhhhhhhh............hhhhhhhhhhhhhhhhhh...hhhhh.....hhhhh...........eeeeeeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee....hhhhhhhhhhh.......hhhhhhhh.........eeeee....eeeee.....eeeeeeee..hhhhhhhhhhhhhhhhhhhhh..ee...ee...hhhhh...eeeeeeee.hhhhhh.hhhhhhhhh.eeeee..eeeeee......hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rf7 A   1 MADPETAAKFKSKNAFPDPLNDPKCNPKSLVKKYLTPKVFESLKNKKTKLGITLWDCINSGVVNLDSGVGVYAGDEESYTLFGPLFDAIIEDYHSPYKLATGHNSDMNPAHVKAPDLDPANRYIRSTRIRVARSLKGYGLAPGVTKAHRLEIEKKVVGVLTSLTGDLAGKYYPLSGMDEKTRQQLVDDHFLFKKGDRFLEAAGINKEWPEGRGIYHNNDKTFLVWLNEEDHLRIISMEKGSDIGSVFSRLCRAVNEIDKKLGFQHTKKHGYLTSCPSNLGTGMRASVHVKIPHAKEHPDFENILTKYHIQARGIDAGVYDISNRRRLGLSEVQCVQDMYDGVKALMELEKEAIAKKRSVFPEVLKNPEVKSLLRKYLTPELFDSLKDKKTAKGISLYDCINSGVENLDSSCGVYAGDEECYTLFAPLFDKIVEDYHSPYKLANKHTSDMNPEKVDAPNLDPEGTYIRSTRIRVARNVKGYALTPGLTRNERLDIERKVVGVLSSLTGDLAGQYYPLTGMDEATRQKLVNDHFLFKKGDRFLEAAGVNKLWPEGRGIFHNNDKTFLVWINEEDQLRIISMEKGSDIGSVFGRLCRAVNEIDKQLGFQHTDAHGYLSGCPTNLGTGMRASVHVKIPKASAHPDFQKICDEFHIQARGIGVFDISNRRRLGLSEVQCVQDMYNGVKKLLEIEKST 714
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310   ||  330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660     ||682       692       702       712  
                                                                                                                                                                                                                                                                                                                                                   314|                                                                                                                                                                                                                                                                                                                                                  666|                                   
                                                                                                                                                                                                                                                                                                                                                    325                                                                                                                                                                                                                                                                                                                                                   679                                   


Chain B from PDB  Type:PROTEIN  Length:700
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh...hhhhh.......hhhhhhhhhhhhhhhh........hhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhh...hhhhh.....hhhhh...........eeeeeeeeee...........hhhhhhhhhhhhhhhhhhhhhhh.eeeee....hhhhhhhhhhh.......hhhhhhh..........eeeee....eeeee.....eeeeeeee..hhhhhhhhhhhhhhhhhhhhh..ee...ee...hhhhh...eeeeeeee..hhhhh.hhhhhhhhh.eeeee..............eeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh....hhhhhhhhhhhhhhhh........hhhhhhhhhhhh............hhhhhhhhhhhhhhhhhh...hhhhh.....hhhhh...........eeeeeeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee....hhhhhhhhhhh.......hhhhhhhh.........eeeee....eeeee.....eeeeeeee..hhhhhhhhhhhhhhhhhhhhh..ee...ee...hhhhh...eeeeeee.........hhhhhhhhh.eeee...eeeee......hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rf7 B   1 MADPETAAKFKSKNAFPDPLNDPKCNPKSLVKKYLTPKVFESLKNKKTKLGITLWDCINSGVVNLDSGVGVYAGDEESYTLFGPLFDAIIEDYHSPYKLATGHNSDMNPAHVKAPDLDPANRYIRSTRIRVARSLKGYGLAPGVTKAHRLEIEKKVVGVLTSLTGDLAGKYYPLSGMDEKTRQQLVDDHFLFKKGDRFLEAAGINKEWPEGRGIYHNNDKTFLVWLNEEDHLRIISMEKGSDIGSVFSRLCRAVNEIDKKLGFQHTKKHGYLTSCPSNLGTGMRASVHVKIPHAKEHPDFENILTKYHIQARGIHGEHSESTGEDAGVYDISNRRRLGLSEVQCVQDMYDGVKALMELEKEAIAKKRSVFPEVLKNPEVKSLLRKYLTPELFDSLKDKKTAKGISLYDCINSGVENLDSSCGVYAGDEECYTLFAPLFDKIVEDYHSPYKLANKHTSDMNPEKVDAPNLDPEGTYIRSTRIRVARNVKGYALTPGLTRNERLDIERKVVGVLSSLTGDLAGQYYPLTGMDEATRQKLVNDHFLFKKGDRFLEAAGVNKLWPEGRGIFHNNDKTFLVWINEEDQLRIISMEKGSDIGSVFGRLCRAVNEIDKQLGFQHTDAHGYLSGCPTNLGTGMRASVHVKIPKASAHPDFQKICDEFHIQARGIVFDISNRRRLGLSEVQCVQDMYNGVKKLLEIEKS 713
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660     ||683       693       703       713
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   666|                                 
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    680
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RF7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RF7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RF7)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KARG_ANTJA | O15992: 4rf6 4rf8 4rf9

(-) Related Entries Specified in the PDB File

4rf6 4rf8 4rf9