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(-) Description

Title :  CRYSTAL STRUCTURE OF UDP-GLUCOSE: ANTHOCYANIDIN 3-O-GLUCOSYLTRANSFERASE IN COMPLEX WITH KAEMPFEROL
 
Authors :  T. Hiromoto, E. Honjo, T. Tamada, R. Kuroki
Date :  23 Sep 14  (Deposition) - 21 Jan 15  (Release) - 04 Nov 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A
Keywords :  Ugt78K6, Gt-B Fold, Glucosyltransferase, Complexed With Kaempferol, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Hiromoto, E. Honjo, N. Noda, T. Tamada, K. Kazuma, M. Suzuki, M. Blaber, R. Kuroki
Structural Basis For Acceptor-Substrate Recognition Of Udp-Glucose: Anthocyanidin 3-O-Glucosyltransferase From Clitoria Ternatea
Protein Sci. V. 24 395 2015
PubMed-ID: 25556637  |  Reference-DOI: 10.1002/PRO.2630

(-) Compounds

Molecule 1
    Chains: A
    EC Number: 2.4.1.115
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE-31
    Expression System Strain: XL1-BLUE
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CT3GT-A
    Organism Common: BUTTERFLY PEA
    Organism Scientific: CLITORIA TERNATEA
    Organism Taxid: 43366

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric/Biological Unit (3, 6)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2GOL3Ligand/IonGLYCEROL
3KMP1Ligand/Ion3,5,7-TRIHYDROXY-2-(4-HYDROXYPHENYL)-4H-CHROMEN-4-ONE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:17 , LEU A:82 , ASN A:137 , TYR A:145 , PRO A:179 , ASP A:181 , PHE A:192 , LEU A:196 , PHE A:365 , GLY A:366 , ASP A:367 , GOL A:1002 , HOH A:1254 , HOH A:1273 , HOH A:1406 , HOH A:1427 , HOH A:1485BINDING SITE FOR RESIDUE KMP A 1001
2AC2SOFTWARESER A:16 , GLY A:345 , PHE A:365 , GLY A:366 , ASP A:367 , GLN A:368 , KMP A:1001 , ACT A:1005 , HOH A:1230 , HOH A:1412BINDING SITE FOR RESIDUE GOL A 1002
3AC3SOFTWAREMET A:1 , PRO A:179 , GLN A:180 , PRO A:363 , GLY A:366 , GLY A:369 , HOH A:1330BINDING SITE FOR RESIDUE GOL A 1003
4AC4SOFTWAREPRO A:13 , PHE A:14 , GLY A:15 , SER A:44 , SER A:45 , PHE A:48 , HOH A:1145 , HOH A:1339BINDING SITE FOR RESIDUE GOL A 1004
5AC5SOFTWARETHR A:273 , HIS A:343 , GOL A:1002 , HOH A:1483BINDING SITE FOR RESIDUE ACT A 1005
6AC6SOFTWAREPRO A:33 , SER A:36 , ASN A:58 , ARG A:60BINDING SITE FOR RESIDUE ACT A 1006

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4REL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4REL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4REL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4REL)

(-) Exons   (0, 0)

(no "Exon" information available for 4REL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:446
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee...hhhhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhh.......eeeeee..............hhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee...hhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.eeee..hhhhhhhhhhhhhhhhh..eee.................hhhhhhhh.....eeeee.......hhhhhhhhhhhhhhhh..eeee.hhhhhhhh..hhhhhh...eeee...hhhhhhh...eeeeee..hhhhhhhhhhh...eee.....hhhhhhhhhhhh...eee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rel A   1 MKNKQHVAIFPFPFGSHLPPLLNLVLKLAHIAPNTSFSFIGTHSSNAFLFTKRHIPNNIRVFTISDGIPEGHVPANNPIEKLDLFLSTGPDNLRKGIELAVAETKQSVTCIIADAFVTSSLLVAQTLNVPWIAFWPNVSCSLSLYFNIDLIRDKCSKDAKNATLDFLPGLSKLRVEDVPQDMLDVGEKETLFSRTLNSLGVVLPQAKAVVVNFFAELDPPLFVKYMRSKLQSLLYVVPLPCPQLLLPEIDSNGCLSWLDSKSSRSVAYVCFGTVVSPPPQEVVAVAEALEESGFPFVWALKESLLSILPKGFVERTSTRGKVVSWVPQSHVLSHGSVGVFVTHCGANSVMESVSNGVPMICRPFFGDQGIAARVIQDIWEVGVIVEGKVFTKNGFVKSLNLILVQEDGKKIRDNALKVKQIVQDAVGPHGQAAEDFNTLVEVISSS 446
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4REL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4REL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4REL)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A4F1R4_CLITE | A4F1R4: 3wc4 4rem 4ren 4whm

(-) Related Entries Specified in the PDB File

3wc4 3WC4 IS THE UNLIGANDED FORM OF THE SAME ENZYME.
4rem
4ren
4whm