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(-) Description

Title :  CRYSTAL STRUCTURE OF R.NGOAVII RESTRICTION ENDONUCLEASE B3 DOMAIN WITH COGNATE DNA
 
Authors :  G. Tamulaitiene, A. Silanskas, S. Grazulis, M. Zaremba, V. Siksnys
Date :  18 Sep 14  (Deposition) - 24 Dec 14  (Release) - 31 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,C,D  (1x)
Biol. Unit 2:  B,E,F  (1x)
Keywords :  Restriction Endonuclease, B3 Dna Binding Domain, Protein-Dna Complex, Hydrolase-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Tamulaitiene, A. Silanskas, S. Grazulis, M. Zaremba, V. Siksnys
Crystal Structure Of The R-Protein Of The Multisubunit Atp-Dependent Restriction Endonuclease Ngoavii.
Nucleic Acids Res. V. 42 14022 2014
PubMed-ID: 25429979  |  Reference-DOI: 10.1093/NAR/GKU1237

(-) Compounds

Molecule 1 - RESTRICTION ENDONUCLEASE R.NGOVII
    Chains: A, B
    EC Number: 3.1.21.4
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PLATE31
    Expression System Strain: ER2566
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: NGO0364
    Organism Scientific: NEISSERIA GONORRHOEAE
    Organism Taxid: 242231
    Strain: ATCC 700825 / FA 1090
 
Molecule 2 - DNA (5'-D(*CP*CP*CP*TP*AP*AP*GP*CP*GP*GP*CP*AP*AP*TP*CP*C)- 3')
    Chains: C, E
    Engineered: YES
    Other Details: SYNTHETIC CONSTRUCT
    Synthetic: YES
 
Molecule 3 - DNA (5'-D(*GP*GP*GP*AP*TP*TP*GP*CP*CP*GP*CP*TP*TP*AP*GP*G)- 3')
    Chains: D, F
    Engineered: YES
    Other Details: SYNTHETIC CONSTRUCT
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): A CD  
Biological Unit 2 (1x):  B  EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4RD5)

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) PROSITE Motifs  (0, 0)

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(-) Sequences/Alignments

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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:160
                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee.hhhhhhhhhhh....eeeee......hhhhhhhh..ee.....ee........ee.hhhhhh........eeeeee...eeeeeeeehhhh.eeee...hhhhhhhhhhhhhhh.........hhhhhhhhh..eeeeee.....eeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rd5 A 185 LGVQKIAPEQIRQLFAQTSEYHFSIPAKTEEKSNLNVFFGEGRRDKRGFVKPRPWYEVELIVSKDITSQEGYPVLKSFTVITDDGWQFQCKTSGDYSKNFRSENDLKTLGKWIKGRLESHGCLQNNEKITHETLREYGNDHFELRSTDNPDVWLLSFKGK 344
                                   194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344


Chain B from PDB  Type:PROTEIN  Length:159
                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee.hhhhhhhhhhh....eeeee......hhhhhhhh..ee.....ee........ee.hhhhhh........eeeeee...eeeeeeeehhhh.eeee...hhhhhhhhhhhhhhh.........hhhhhhhhh..eeeeee.....eeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rd5 B 185 LGVQKIAPEQIRQLFAQTSEYHFSIPAKTEEKSNLNVFFGEGRRDKRGFVKPRPWYEVELIVSKDITSQEGYPVLKSFTVITDDGWQFQCKTSGDYSKNFRSENDLKTLGKWIKGRLESHGCLQNNEKITHETLREYGNDHFELRSTDNPDVWLLSFKG 343
                                   194       204       214       224       234       244       254       264       274       284       294       304       314       324       334         


Chain C from PDB  Type:DNA  Length:15
                                               
                 4rd5 C   2 CCTAAGCGGCAATCC  16
                                    11     


Chain D from PDB  Type:DNA  Length:15
                                               
                 4rd5 D  17 GGGATTGCCGCTTAG  31
                                    26     


Chain E from PDB  Type:DNA  Length:15
                                               
                 4rd5 E   2 CCTAAGCGGCAATCC  16
                                    11     


Chain F from PDB  Type:DNA  Length:15
                                               
                 4rd5 F  17 GGGATTGCCGCTTAG  31
                                    26
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 Classification and Annotation

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (2, 2)

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