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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN SLITRK1
 
Authors :  H. M. Kim, B. S. Park, D. Kim, S. G. Lee
Date :  17 Sep 14  (Deposition) - 19 Nov 14  (Release) - 26 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.19
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Leucine Rich-Repeat, Synaptic Adhesion, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. W. Um, K. H. Kim, B. S. Park, Y. Choi, D. Kim, C. Y. Kim, S. J. Kim, M. Kim, J. S. Ko, S. G. Lee, G. Choii, J. Nam, W. D. Heo, E. Kim, J. O. Lee, J. Ko, H. M. Kim
Structural Basis For Lar-Rptp/Slitrk Complex-Mediated Synaptic Adhesion.
Nat Commun V. 5 5423 2014
PubMed-ID: 25394468  |  Reference-DOI: 10.1038/NCOMMS6423

(-) Compounds

Molecule 1 - SLIT AND NTRK-LIKE PROTEIN 1
    Chains: A, B
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Taxid: 7108
    Gene: SLITRK1, KIAA1910, LRRC12, UNQ233/PRO266
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4RCW)

(-) Sites  (0, 0)

(no "Site" information available for 4RCW)

(-) SS Bonds  (6, 6)

Asymmetric Unit
No.Residues
1A:345 -A:359
2A:533 -A:558
3A:535 -A:578
4B:345 -B:359
5B:533 -B:558
6B:535 -B:578

(-) Cis Peptide Bonds  (7, 7)

Asymmetric Unit
No.Residues
1Pro A:342 -Gly A:343
2Pro A:351 -Gly A:352
3Thr A:560 -Pro A:561
4Ser B:353 -Gly B:354
5Lys B:420 -Asn B:421
6Leu B:423 -Asp B:424
7Thr B:560 -Pro B:561

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RCW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RCW)

(-) Exons   (0, 0)

(no "Exon" information available for 4RCW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:234
                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeee....eeee...............eeeee.......eehhhhhh......eee.......ee............eee.......ee.hhhhh......eee.......ee..hhhhh.....eee....................eee......................eee.....ee....hhhhhhhhhh...........eeehhhhh.......hhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4rcw A 342 PGGCSCDHIPGGLKMNCNNRNVSSLADLKSNVQELFLRDNKIHSIRKSHFVDYKNLILLDLGNNNIATVENNTFKNLLDLRWLYMDSNYLDTLSREKFAGLQNLEYLNVEYNAIQLILPGTFNAMPKLRILILNNNLLRSLPVDVFAGVSLSKLSLHNNYFMYLPVAGVLDQLTSIIQIDLHGNPWECSCTIVPFKQWAERLGSEVLMSDLKCETPVNFFRKDFMLLSNDEICP 579
                                   351||     362       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575    
                                    352|              371|                                                                                                                                                                                                            
                                     354               375                                                                                                                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:232
                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.......eee...............eeeee.....eehhhhh.......eeeee.....ee............eee.......ee.hhhhh......eee.......ee..hhhhh.....eee....................eee......................eee.....ee....hhhhhhhhhh...........eeehhhhh.......hhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rcw B 343 GGCSCDHIPGSGLKMNCNNRNVSSLADSNVQELFLRDNKIHSIRKSHFVDYKNLILLDLGNNNIATVENNTFKNLLDLRWLYMDSNYLDTLSREKFAGLQNLEYLNVEYNAIQLILPGTFNAMPKLRILILNNNLLRSLPVDVFAGVSLSKLSLHNNYFMYLPVAGVLDQLTSIIQIDLHGNPWECSCTIVPFKQWAERLGSEVLMSDLKCETPVNFFRKDFMLLSNDEICP 579
                                   352       362      |377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577  
                                                    369|                                                                                                                                                                                                            
                                                     375
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RCW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RCW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RCW)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Leu B:423 - Asp B:424   [ RasMol ]  
    Lys B:420 - Asn B:421   [ RasMol ]  
    Pro A:342 - Gly A:343   [ RasMol ]  
    Pro A:351 - Gly A:352   [ RasMol ]  
    Ser B:353 - Gly B:354   [ RasMol ]  
    Thr A:560 - Pro A:561   [ RasMol ]  
    Thr B:560 - Pro B:561   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SLIK1_HUMAN | Q96PX8: 4rca

(-) Related Entries Specified in the PDB File

4rca CRYSTAL STRUCTURE OF HUMAN PTPDELTA AND HUMAN SLITRK1 COMPLEX