4R9F - JenaLib

Title :   CPMNBP1 WITH MANNOBIOSE BOUND

Authors :   J. R. Chekan, V. Agarwal, S. K. Nair

Date :   04 Sep 14 (Deposition) - 29 Oct 14 (Release) - 31 Dec 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.40

Chains :   Asym./Biol. Unit : A

Keywords :   Mannan Binding Protein, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. R. Chekan, I. H. Kwon, V. Agarwal, D. Dodd, V. Revindran, R. I. Mackie I. Cann, S. K. Nair
Structural And Biochemical Basis For Mannan Utilization By Caldanaerobius Polysaccharolyticus Strain Atcc Baa-17.
J. Biol. Chem. V. 289 34965 2014
PubMed-ID: 25342756 | Reference-DOI: 10.1074/JBC.M114.579904

Compounds

Molecule 1 - MBP1
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	MBP1
	Organism Scientific	:	CALDANAEROBIUS POLYSACCHAROLYTICUS
	Organism Taxid	:	44256
	Strain	:	ATCC BAA-17

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 18)

Asymmetric/Biological Unit (2, 18)

No.	Name	Count	Type	Full Name
1	BMA	2	Ligand/Ion	BETA-D-MANNOSE
2	MSE	16	Mod. Amino Acid	SELENOMETHIONINE

Sites (2, 2)

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	TRP A:86 , ARG A:139 , GLN A:191 , ASN A:251 , SER A:252 , BMA A:502 , HOH A:614 , HOH A:701 , HOH A:712 , HOH A:726 , HOH A:840 , HOH A:843	BINDING SITE FOR RESIDUE BMA A 501
2	AC2	SOFTWARE	TRP A:25 , ASP A:29 , TRP A:86 , ASN A:137 , TRP A:272 , ASN A:307 , ASN A:343 , BMA A:501 , HOH A:614 , HOH A:647	BINDING SITE FOR RESIDUE BMA A 502

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:402
                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeee..hhhhhhhhhhhhhhhhhhh..eeeeeee.hhhhh........hhhhhhhhhh....eeee....hhhhhhhh.....hhhhhh..hhhhhhhhhhhh.ee..ee..eeeeeeeeeeeeehhhhhhh.........hhhhhhhhhhhh.eee..eeee..........hhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhh....................eeeee.hhhhhhhhhh....eeee...........eeeeeeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhheee......hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4r9f A  15 KQVVLTLWYPWAGPDGDAVVSLAKEYSKTHPNVQIKAQmVSGAGIAATQGGGQGKFLSAVAAGNPPDLVLYWGQDALPGLADQGAIIPLDDYLKDVDTSKFFEAAYNAmKYKGKIYGLPEmVNVRVLFWNKDLFKQAGLDPNTPPKTIAELDQmAAKLTKTKNGTIEQmGFIPWIGQGVPHVmAGVFGTSLVDSNGNPILSPDKNPQLLNLLKWEVSYSDKYGAmNINKFIAGmSQNSSQANDPFVLGKVAmmISGEWQINANKQYNPKLNFGVGPIPQAPGGKPmPSLmDGNTWmIPKGSKHPQEAmDFIKWTmDPQRIADTADKVYNIAPIVEAAKIQKLNNDPYFKEVLNVAQKGSIYYTPAAKGmLSTETAANNAFQAAQYKKSTPEQALKNAQAEAE 416
                                    24        34        44        54        64        74        84        94       104       114       124       134|      144       154       164   |   174       184       194  |    204       214       224       234    |  244   |   254       264 ||    274       284       294     | 304     | 314       324    |  334       344       354       364       374       384       394       404       414  
                                                                 53-MSE                                                               123-MSE     135-MSE                          168-MSE        183-MSE       197-MSE                                   239-MSE  248-MSE           266-MSE                           300-MSE     |         322-MSE  |                                                   383-MSE                             
                                                                                                                                                                                                                                                                                      267-MSE                              304-MSE |                329-MSE                                                                                   
                                                                                                                                                                                                                                                                                                                                 310-MSE

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (1, 1)

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Description