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(-) Description

Title :  STRUCTURE OF JEV PROTEASE
 
Authors :  D. T. Nair, T. Weinert, M. Wang, V. Olieric
Date :  03 Sep 14  (Deposition) - 24 Dec 14  (Release) - 12 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.13
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Serine Protease, Protease, Ns2B, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Weinert, V. Olieric, S. Waltersperger, E. Panepucci, L. Chen, H. Zhang, D. Zhou, J. Rose, A. Ebihara, S. Kuramitsu, D. Li, N. Howe, G. Schnapp, A. Pautsch, K. Bargsten, A. E. Prota, P. Surana, J. Kottur, D. T. Nair, F. Basilico, V. Cecatiello, S. Pasqualato, A. Boland, O. Weichenrieder, B. C. Wang, M. O. Steinmetz, M. Caffrey, M. Wang
Fast Native-Sad Phasing For Routine Macromolecular Structur Determination.
Nat. Methods V. 12 131 2015
PubMed-ID: 25506719  |  Reference-DOI: 10.1038/NMETH.3211

(-) Compounds

Molecule 1 - SERINE PROTEASE SUBUNIT NS2B
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: C41DE3
    Expression System Taxid: 562
    Expression System Vector Type: PGEX6P1
    Fragment: UNP RESIDUES 1352-1368
    Gene: NS3
    Organism Scientific: JAPANESE ENCEPHALITIS VIRUS
    Organism Taxid: 11076
    Strain: NAKAYAMA
 
Molecule 2 - NS3
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 1522-1662
    Gene: NS3
    Organism Scientific: JAPANESE ENCEPHALITIS VIRUS
    Organism Taxid: 11072

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL B:126 , GLY B:151 , GLY B:153 , HOH B:321BINDING SITE FOR RESIDUE CL B 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4R8T)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4R8T)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4R8T)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4R8T)

(-) Exons   (0, 0)

(no "Exon" information available for 4R8T)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:21
                                                     
               SCOP domains --------------------- SCOP domains
               CATH domains --------------------- CATH domains
               Pfam domains --------------------- Pfam domains
         Sec.struct. author ...eeeeeeee....hhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------- SAPs(SNPs)
                    PROSITE --------------------- PROSITE
                 Transcript --------------------- Transcript
                 4r8t A  48 SEFDMWLERAADITWEMDAAI  68
                                    57        67 


Chain B from PDB  Type:PROTEIN  Length:141
                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeee..eeeeeeeeeee..eeeehhhhhh...ee....ee.eeeee....eeee...............eeeee.......eeeee..eeee....eeee.....hhhhh..eee.....eeee...eee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4r8t B  18 TTTGVYRIMARGILGTYQAGVGVMYENVFHTLWHTTRGAAIMSGEGKLTPYWGSVKEDRIAYGGPWRFDRKWNGTDDVQVIVVEPGKAAVNIQTKPGVFKTPLGEVGAVSLDYPRGTSGSPILDSNGDIIGLYGNGVELGD 158
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4R8T)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4R8T)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4R8T)

(-) Gene Ontology  (52, 77)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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