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(-) Description

Title :  CRYSTAL STRUCTURE OF N-LOBE OF HUMAN ARRDC3(1-180)
 
Authors :  S. Qi, J. Hurley
Date :  28 Aug 14  (Deposition) - 01 Oct 14  (Release) - 10 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.61
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Arrestin Fold, Gpcr Downregulation, Beat 2 Adrenergic Receptor, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Qi, M. O'Hayre, J. S. Gutkind, J. H. Hurley
Insights Into Beta 2-Adrenergic Receptor Binding From Structures Of The N-Terminal Lobe Of Arrdc3.
Protein Sci. V. 23 1708 2014
PubMed-ID: 25220262  |  Reference-DOI: 10.1002/PRO.2549

(-) Compounds

Molecule 1 - ARRESTIN DOMAIN-CONTAINING PROTEIN 3
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 1-180
    Gene: ARRDC3, KIAA1376
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: TBP-2-LIKE INDUCIBLE MEMBRANE PROTEIN, TLIMP

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 11)

Asymmetric Unit (1, 11)
No.NameCountTypeFull Name
1PO411Ligand/IonPHOSPHATE ION
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1PO46Ligand/IonPHOSPHATE ION
Biological Unit 2 (1, 5)
No.NameCountTypeFull Name
1PO45Ligand/IonPHOSPHATE ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:54 , LYS A:56 , ARG A:58 , ARG A:135 , TRP A:137 , LYS A:153 , PO4 B:203BINDING SITE FOR RESIDUE PO4 A 201
02AC2SOFTWAREHIS A:50 , LYS A:85 , PO4 A:203 , HIS B:50 , LYS B:85 , PO4 B:201BINDING SITE FOR RESIDUE PO4 A 202
03AC3SOFTWAREHIS A:50 , LYS A:139 , GLU A:141 , LYS A:151 , PO4 A:202 , ARG B:52 , PO4 B:201 , PO4 B:203BINDING SITE FOR RESIDUE PO4 A 203
04AC4SOFTWARELYS A:45 , HIS A:143 , PRO A:149BINDING SITE FOR RESIDUE PO4 A 204
05AC5SOFTWAREARG A:52 , GLU A:80 , ASN A:83 , GLU B:141 , LYS B:151BINDING SITE FOR RESIDUE PO4 A 205
06AC6SOFTWAREHIS A:103 , HIS A:110 , TYR A:112BINDING SITE FOR RESIDUE PO4 A 206
07AC7SOFTWAREARG A:52 , PO4 A:202 , PO4 A:203 , HIS B:50 , LYS B:139 , GLU B:141 , LYS B:151 , PO4 B:203BINDING SITE FOR RESIDUE PO4 B 201
08AC8SOFTWAREHIS B:54 , LYS B:56 , ARG B:135 , TRP B:137 , LYS B:153BINDING SITE FOR RESIDUE PO4 B 202
09AC9SOFTWAREARG A:52 , LYS A:139 , PO4 A:201 , PO4 A:203 , ARG B:52 , LYS B:139 , LYS B:153 , PO4 B:201BINDING SITE FOR RESIDUE PO4 B 203
10BC1SOFTWARELYS B:45 , HIS B:143BINDING SITE FOR RESIDUE PO4 B 204
11BC2SOFTWAREGLU A:141 , HIS A:143 , LYS A:151 , ARG B:52 , GLU B:80 , ASN B:83BINDING SITE FOR RESIDUE PO4 B 205

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4R7X)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4R7X)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4R7X)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4R7X)

(-) Exons   (0, 0)

(no "Exon" information available for 4R7X)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:150
                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeee.......ee....eeeeeeeeeeeeeeee.eeeeeeeeeeeeeeeeee...eeeeeeeeeeeeeeeeeee...eeeeeeeeeeeeeee.........ee...eeeeeeeeeeee......eeeeeeeee.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4r7x A   3 LGKVKSLTISFDCLNNVPVYSSGDTVSGRVNLEVTGEIRVKSLKIHARGHAKVRWTESRNTAYTQNYTEEVEYFNHKDILIGHFHTIHSGRHEYAFSFELPQTPLATSFEGRHGSVRYWVKAELHRPWLLPVKLKKEFTVFEHIDINTPS 168
                                    12    ||  24        34        44        54        64|       78        88  ||   108       118       128       138       148       158       168
                                         17|                                          64|                    91|                                                                  
                                          20                                           69                    102                                                                  


Chain B from PDB  Type:PROTEIN  Length:149
                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee......ee....eeeeeeeeeee..eee.eeeeeeeeeeeeeeeeee....eeeeeeeeeeeeeeeeeee..eee..eeeeeeeeee.........ee...eeeeeeeeeeee......eeeeeeeee.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4r7x B   3 LGKVKSLTISFDCLNVPVYSSGDTVSGRVNLEVTGEIRVKSLKIHARGHAKVRWTESRNNTAYTQNYTEEVEYFNHKDILIGFHTIHSGRHEYAFSFELPQTPLATSFEGRHGSVRYWVKAELHRPWLLPVKLKKEFTVFEHIDINTPS 168
                                    12   ||   25        35        45        55        68        78        88 ||    109       119       129       139       149       159         
                                        16|                                          64|                    90|                                                                  
                                         20                                           68                    102
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4R7X)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4R7X)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4R7X)

(-) Gene Ontology  (16, 16)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ARRD3_HUMAN | Q96B67: 4n7h 4r7v

(-) Related Entries Specified in the PDB File

4r7v