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(-) Description

Title :  DETERMINATION OF THE FORMYLGLYCINAMIDE RIBONUCLEOTIDE AMIDOTRANSFERASE AMMONIA PATHWAY BY COMBINING 3D-RISM THEORY WITH EXPERIMENT
 
Authors :  A. S. Tanwar, D. J. Sindhikara, F. Hirata, R. Anand
Date :  27 Aug 14  (Deposition) - 21 Jan 15  (Release) - 21 Jan 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Gene Duplication, Amidotransferase, Atp Binding, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. S. Tanwar, D. J. Sindhikara, F. Hirata, R. Anand
Determination Of The Formylglycinamide Ribonucleotide Amidotransferase Ammonia Pathway By Combining 3D-Rism Theor With Experiment
Acs Chem. Biol. 2014
PubMed-ID: 25551173  |  Reference-DOI: 10.1021/CB501015R

(-) Compounds

Molecule 1 - PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE
    Chains: A
    EC Number: 6.3.5.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PURL, STM2565
    Mutation: YES
    Organism Scientific: SALMONELLA TYPHIMURIUM LT2
    Organism Taxid: 99287
    Strain: LT2
    Synonym: FGAM SYNTHASE, FGAMS, FORMYLGLYCINAMIDE RIBOTIDE AMIDOTRANSFERASE, FGARAT, FORMYLGLYCINAMIDE RIBOTIDE SYNTHETASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 11)

Asymmetric/Biological Unit (4, 11)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2CYG1Mod. Amino Acid2-AMINO-4-(AMINO-3-OXO-PROPYLSULFANYLCARBONYL)-BUTYRICACID
3MG3Ligand/IonMAGNESIUM ION
4SO46Ligand/IonSULFATE ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:679 , ASN A:722 , ASP A:884 , SER A:886 , ADP A:1310BINDING SITE FOR RESIDUE MG A 1301
02AC2SOFTWAREILE A:697 , GLU A:718 , ADP A:1310 , HOH A:1615BINDING SITE FOR RESIDUE MG A 1302
03AC3SOFTWAREGLU A:896 , ADP A:1310 , HOH A:1444BINDING SITE FOR RESIDUE MG A 1303
04AC4SOFTWAREHIS A:216 , GLU A:294 , GLY A:504 , ALA A:505BINDING SITE FOR RESIDUE SO4 A 1304
05AC5SOFTWAREHIS A:216 , THR A:295 , HIS A:296 , ASN A:297 , HIS A:298 , SER A:778 , HOH A:1511BINDING SITE FOR RESIDUE SO4 A 1305
06AC6SOFTWAREARG A:812 , LYS A:1228 , VAL A:1229BINDING SITE FOR RESIDUE SO4 A 1306
07AC7SOFTWAREGLN A:1176 , GLN A:1183 , GLY A:1184 , MET A:1185 , VAL A:1186 , HOH A:1553BINDING SITE FOR RESIDUE SO4 A 1307
08AC8SOFTWAREPRO A:1040 , LYS A:1041 , HIS A:1086BINDING SITE FOR RESIDUE SO4 A 1308
09AC9SOFTWAREHIS A:1086 , ARG A:1126 , PRO A:1127 , GLN A:1128 , HOH A:1598BINDING SITE FOR RESIDUE SO4 A 1309
10BC1SOFTWAREILE A:333 , THR A:386 , GLY A:387 , TYR A:388 , PHE A:389 , LYS A:649 , LEU A:652 , VAL A:653 , GLN A:668 , PRO A:676 , ALA A:678 , ASP A:679 , GLU A:718 , ASN A:722 , SER A:886 , MG A:1301 , MG A:1302 , MG A:1303 , HOH A:1444 , HOH A:1609 , HOH A:1615BINDING SITE FOR RESIDUE ADP A 1310

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4R7G)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Tyr A:1233 -Pro A:1234

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4R7G)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4R7G)

(-) Exons   (0, 0)

(no "Exon" information available for 4R7G)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:1284
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee..eeeeeeeeee..hhhhhhhhhhhhhhhh....eeeeeeeeeeee....hhhhhhhhhhhh.............eeeeeee.....hhhhhhhhhhhhhh....eeeeeeeeeeeee....hhhhhhhhhhhh.....eeee..hhhhhhhh...........hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhheeee..eee..hhhhhhhhhhhhh...eee......eeeeeeeeeeeee......eeeeeeeeeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeeeeeee.......................hhhhhhhhhhhhhhhhhhhhh..eeeeeeee.eeeeee..eeeeee....eeeeeeeeeehhhhh.........eeeeee..............hhhhhhhhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhhhh..eeeee.hhh.......hhhhhhhh....eeeeeehhhhhhhhhhhhhhhh..eeeeeeee...eeeeee....eeeeeeehhhhh......eeee...............hhhhhhhhhhh......hhhhhh.........eee..ee....ee....eeee.......eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhheeeeeee......hhhhhhhhhhhhhhhhhhhhhh....eeeee...eeeee....eeeee...eeeeeeeeee.hhhhh.........eeeeeee..........hhhhhh............hhhhhhhhhhhhhhhhhh....eeee...hhhhhhhhhhhhhhh.eeeee.hhhh.hhhhhhhh...eeeeeee..hhhhhhhhhhhh.hhh.eeeeeeee...eeeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....................hhhhhh.....eeeeee.....hhhhhhhhhhhh..eeeeeehhhhhh...hhhhh.eeee...hhhhhh...hhhhhhhhhhhhhhhhhhhhhhh....eeeeehhhhhhhhhhhhhh.......eee.......eeeeeeeee..............eeeeeeee...eee..hhhhhhhhhhh..eeeee.................hhh.eeeee.....eeee..hhhhh.hhhhh............hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4r7g A   -7 GLVPRGSHMMEILRGSPALSAFRINKLLARFQAANLQVHNIYAEYVHFADLNAPLNDSEQAQLTRLLQYGPALSSHTPAGKLLLVTPRPGTISPWSSKATDIAHNCGLQQVDRLERGVAYYIEASTLTAEQWRQVAAELHDRMMETVFSSLTDAEKLFIHHQPAPVSSVDLLGEGRQALIDANLRLGLALAEDEIDYLQEAFTKLGRNPNDIELYMFAQANSEHCRHKIFNADWIIDGKPQPKSLFKMIKNTFETTPDYVLSAYKDNAAVMEGSAVGRYFADHNTGRYDFHQEPAHILMKVETHNHPTAISPWPGAATGSGGEIRDEGATGRGAKPKAGLIGFSVSNLRIPGFEQPWEEDFGKPERIVTALDIMTEGPLGGAAFNNEFGRPALTGYFRTYEEKVNSHNGEELRGYHKPIMLAGGIGNIRADHVQKGEIVVGAKLIVLGGPAMNIGFASVQRDNPEMERRCQEVIDRCWQLGDANPILFIHDVGAGGLSNAMPELVSDGGRGGKFELRDILSDEPGMSPLEIWCNESQERYVLAVAADQLPLFDELCKRERAPYAVIGDATEEQHLSLHDNHFDNQPIDLPLDVLLGKTPKMTRDVQTLKAKGDALNRADITIADAVKRVLHLPTVAEKTFLVTIGDRTVTGMVARDQMVGPWQVPVADCAVTTASLDSYYGEAMSIGERAPVALLDFAASARLAVGEALTNIAATQIGDIKRIKLSANWMAAAGHPGEDAGLYDAVKAVGEELCPQLGLTIPVGKDSMSMKTRWQEGNEQREMTSPLSLVISAFARVEDVRHTLTPQLSTEDNALLLIDLGKGHNALGATALAQVYRQLGDKPADVRDVAQLKGFYDAMQALVAARKLLAWHDRSDGGLLVTLAEMAFAGHCGVQVDIAALGDDHLAALFNEELGGVIQVRAEDRDAVEALLAQYGLADCVHYLGQALAGDRFVITANDQTVFSESRTTLRVWWAETTWQMQRLRDNPQCADQEHEAKANDTDPGLNVKLSFDINEDIAAPYIATGARPKVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLGGRIGLGNFHALVACGGFSYGDVLGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVcNGCQMMSNLRELIPGSELWPRFVRNHSDRFEARFSLVEVTQSPSLLLQGMVGSQMPIAVSHGEGRVEVRDDAHLAALESKGLVALRYVDNFGKVTETYPANPNGSPNGITAVTTENGRVTIMMPHPERVFRTVANSWHPENWGEDSPWMRIFRNARKQLG 1295
                                     2        12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442    || 471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861       871       881       891       901       911       921       931       941       951       961       971       981       991      1001      1011      1021      1031      1041      1051      1061      1071      1081      1091      1101      1111      1121      1131   |  1141      1151      1161      1171      1181      1191      1201      1211      1221      1231      1241      1251      1261      1271      1281      1291    
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                447|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        1135-CYG                                                                                                                                                            
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 467
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4R7G)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4R7G)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4R7G)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

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  4r7g
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 Related Entries

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UniProtKB/Swiss-Prot
        PUR4_SALTY | P74881: 1t3t 3ugj 3ujn 3umm 4l78 4lgy 4mgh

(-) Related Entries Specified in the PDB File

1t3t THIS IS AN AMIDOTRANFERASE ENZYME