4R6M - JenaLib

Title :   CRYSTAL STRUCTURE OF DNA DUPLEX CONTAINING TWO CONSECUTIVE MERCURY-MEDIATED BASE PAIRS

Authors :   C. Y. Xu, F. Yu, L. H. Wang, Y. Zhao, T. Lin, C. H. Fan, J. H. He

Date :   26 Aug 14 (Deposition) - 02 Sep 15 (Release) - 02 Sep 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.36

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)
Biol. Unit 3: E,F  (1x)

Keywords :   B Double Helix, Metallo Dna Duplex, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Y. Xu, F. Yu, L. H. Wang, Y. Zhao, T. Lin, C. H. Fan, J. H. He
Crystal Structure Of Dna Duplex Containing Two Consecutive Mercury-Mediated Base Pairs
To Be Published
PubMed: search

Compounds

*Molecule 1 - DNA (5'-D(PGPGPAPCPTPTPCPGPCPG)-3')*
	Chains	:	A, C, E
	Engineered	:	YES
	Organism Scientific	:	SYNTHETIC CONSTRUCT
	Organism Taxid	:	32630
	Synthetic	:	YES

*Molecule 2 - DNA (5'-D(PCPGPCPGPTPTPGPTPCPC)-3')*
	Chains	:	B, D, F
	Engineered	:	YES
	Organism Scientific	:	SYNTHETIC CONSTRUCT
	Organism Taxid	:	32630
	Synthetic	:	YES

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 6)

Asymmetric Unit (1, 6)

No.	Name	Count	Type	Full Name
1	HG	6	Ligand/Ion	MERCURY (II) ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	HG	-1	Ligand/Ion	MERCURY (II) ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	HG	-1	Ligand/Ion	MERCURY (II) ION

Biological Unit 3 (0, 0)

No.	Name	Count	Type	Full Name
1	HG	-1	Ligand/Ion	MERCURY (II) ION

Sites (6, 6)

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	DT A:5 , DT B:5 , DT B:6 , DG B:7 , HG B:102	BINDING SITE FOR RESIDUE HG B 101
2	AC2	SOFTWARE	DT A:6 , DG B:4 , DT B:5 , DT B:6 , HG B:101	BINDING SITE FOR RESIDUE HG B 102
3	AC3	SOFTWARE	DT C:6 , DC C:7 , DG D:4 , DT D:5 , DT D:6 , HG D:102	BINDING SITE FOR RESIDUE HG D 101
4	AC4	SOFTWARE	DC C:4 , DT C:5 , DT D:5 , DT D:6 , DG D:7 , HG D:101	BINDING SITE FOR RESIDUE HG D 102
5	AC5	SOFTWARE	DT E:5 , HOH E:201 , DT F:6 , DG F:7 , HG F:101	BINDING SITE FOR RESIDUE HG E 101
6	AC6	SOFTWARE	DT E:6 , HG E:101 , DG F:4 , DT F:5 , DT F:6 , HOH F:201	BINDING SITE FOR RESIDUE HG F 101

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:DNA  Length:10
                                         
                  4r6m A  1 GGACTTCGCG 10
                                    10

Chain B from PDB  Type:DNA  Length:10
                                         
                  4r6m B  1 CGCGTTGTCC 10
                                    10

Chain C from PDB  Type:DNA  Length:10
                                         
                  4r6m C  1 GGACTTCGCG 10
                                    10

Chain D from PDB  Type:DNA  Length:10
                                         
                  4r6m D  1 CGCGTTGTCC 10
                                    10

Chain E from PDB  Type:DNA  Length:10
                                         
                  4r6m E  1 GGACTTCGCG 10
                                    10

Chain F from PDB  Type:DNA  Length:10
                                         
                  4r6m F  1 CGCGTTGTCC 10
                                    10

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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